PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P01400_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 383aa MW: 43373.4 Da PI: 4.9666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P01400_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2e-55	6	125	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePwdLp + ewyfFs+rd+ky++g+r+nrat++gyWkatg GSMUA_Achr11P01400_001 6 LPPGFRFHPTDEELVAYYLKRKINGREIEL-EIIPEVDLYKCEPWDLP------DLEWYFFSPRDRKYPNGSRTNRATRAGYWKATG 85 79**************************.99**********9......579************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl GSMUA_Achr11P01400_001 86 KDRRVSS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 125 **9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	3	149	IPR003441	NAC domain
PROSITE profile	PS51005	61.043	6	149	IPR003441	NAC domain
Pfam	PF02365	1.7E-30	7	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MASMSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPDLEWYFFS 60 PRDRKYPNGS RTNRATRAGY WKATGKDRRV SSQRRAVGMK KTLVYYRGRA PHGSRTDWVM 120 HEYRLDENEC ENASAGLQDA YALCRVFKKT APGIKHSGLP ADRSPTVDVS SEGRVDDLES 180 CGVPFPNDVW SSEMVHGQGA FLGASTPVDG RWMQYLTEEE EAYSPGSFSY MPSKVDVALQ 240 CARLQHRLSL PPLEVEDFSQ INLTESKILH SGNYGDTGNQ VDIIQEILSV ASASQELINN 300 SGCHDMWVGA NPHGEEEFAS FFELDKGSDG IQFPQTSFMS SLRSIAKSSN VGELPTKLFE 360 ISDLEEEFKE EEKRVEHLRG VYR

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MASMSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPDLEWYFFS  60
PRDRKYPNGS RTNRATRAGY WKATGKDRRV SSQRRAVGMK KTLVYYRGRA PHGSRTDWVM  120
HEYRLDENEC ENASAGLQDA YALCRVFKKT APGIKHSGLP ADRSPTVDVS SEGRVDDLES  180
CGVPFPNDVW SSEMVHGQGA FLGASTPVDG RWMQYLTEEE EAYSPGSFSY MPSKVDVALQ  240
CARLQHRLSL PPLEVEDFSQ INLTESKILH SGNYGDTGNQ VDIIQEILSV ASASQELINN  300
SGCHDMWVGA NPHGEEEFAS FFELDKGSDG IQFPQTSFMS SLRSIAKSSN VGELPTKLFE  360
ISDLEEEFKE EEKRVEHLRG VYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	1	155	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	1	155	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	1	155	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	1	155	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	1	155	15	174	NAC domain-containing protein 19
3swm_B	1e-57	1	155	15	174	NAC domain-containing protein 19
3swm_C	1e-57	1	155	15	174	NAC domain-containing protein 19
3swm_D	1e-57	1	155	15	174	NAC domain-containing protein 19
3swp_A	1e-57	1	155	15	174	NAC domain-containing protein 19
3swp_B	1e-57	1	155	15	174	NAC domain-containing protein 19
3swp_C	1e-57	1	155	15	174	NAC domain-containing protein 19
3swp_D	1e-57	1	155	15	174	NAC domain-containing protein 19
4dul_A	1e-57	1	155	12	171	NAC domain-containing protein 19
4dul_B	1e-57	1	155	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018676048.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-99	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	M0RNH0	0.0	M0RNH0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P01400_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-108	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]