PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 278aa    MW: 31267.4 Da    PI: 5.6257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1622.2e-50101371128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrF P+deelv++yL kkv ++++++  ++ evd+++ ePw+Lp  +k + +ewyfFs rd+kyatg+r+nrat+sgyWkatg
  GSMUA_Achr11P00880_001  10 LPPGFRFYPSDEELVCHYLYKKVINESTSE-ATMVEVDLHTREPWELPDVAKLGADEWYFFSFRDRKYATGSRTNRATRSGYWKATG 95 
                             79************************9888.77***************87788999******************************* PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             kd++v++  ++++vg++ktLvfy grap+g k+ W+mhe+r+
  GSMUA_Achr11P00880_001  96 KDRTVYEPsTHAKVGMRKTLVFYGGRAPNGIKSGWIMHEFRM 137
                             *******977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-597156IPR003441NAC domain
PROSITE profilePS5100557.92810156IPR003441NAC domain
PfamPF023651.8E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGLRDIEFTL PPGFRFYPSD EELVCHYLYK KVINESTSEA TMVEVDLHTR EPWELPDVAK  60
LGADEWYFFS FRDRKYATGS RTNRATRSGY WKATGKDRTV YEPSTHAKVG MRKTLVFYGG  120
RAPNGIKSGW IMHEFRMENP HSPPKEDWVL CRVFKKSKGE AEHENTGSSS PTLRSSSSPL  180
DLLMPDVVCH EQLGSSFSTL PRQEDSSSNP FMNMAMLQCN LLDFPQEIMG STAMVGMSSS  240
CEGEIGCLME LGFGHGFGEA GMARLDATAG FWMDKMSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-5111577169NAC domain-containing protein 19
3swm_B5e-5111577169NAC domain-containing protein 19
3swm_C5e-5111577169NAC domain-containing protein 19
3swm_D5e-5111577169NAC domain-containing protein 19
3swp_A5e-5111577169NAC domain-containing protein 19
3swp_B5e-5111577169NAC domain-containing protein 19
3swp_C5e-5111577169NAC domain-containing protein 19
3swp_D5e-5111577169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382004.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ9FLJ26e-61NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0RNB90.0M0RNB9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P00880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-80NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]