PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 541aa    MW: 59958.9 Da    PI: 7.7956
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-161011822099
                             HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                      B3  20 kkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              + +++ ++++   ktlt  d ++     +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l+++++r+
  GSMUA_Achr11P00640_001 101 MNGIDSQEKPTSFAKTLTQSDANNgggfSVWKFRHIYRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL--RAENGDLRIGIRRA 182
                             55555555555555555555533357889***************************************..4488889****996 PP
2Auxin_resp1125.8e-37228311183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ a+ + +FevvY+Pra t+eF+vk++ v +a+++++s+GmRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+
  GSMUA_Achr11P00640_001 228 AATFATRRHPFEVVYYPRANTPEFCVKAAAVTAAIRTRWSPGMRFKMAFETEDSSRISWfMGTISSVEVADPVRWPNSPWRLLQ 311
                             57788999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-15109183IPR015300DNA-binding pseudobarrel domain
CDDcd100177.57E-12112181No hitNo description
SMARTSM010195.0E-5113183IPR003340B3 DNA binding domain
PfamPF023627.2E-14124182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-18129185IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.687131183IPR003340B3 DNA binding domain
PfamPF065078.6E-33228311IPR010525Auxin response factor
PROSITE profilePS5174521.017463541IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKDHDRCLDS QLWHACAGGM VQMPAVNSRV YYFPQGHAEH AQGVVDFGTS RQIPPLILCR  60
VTAVKFMADK ETDEVFAKIQ MVPISNSELD CGEDGCLDLG MNGIDSQEKP TSFAKTLTQS  120
DANNGGGFSV WKFRHIYRGT PRRHLLTTGW SAFVNQKKLV AGDSIVFLRA ENGDLRIGIR  180
RAKRGGVGDG PETPSGWNPP GGSTGGNFTS SRGMRGRCRV TAVSVVEAAT FATRRHPFEV  240
VYYPRANTPE FCVKAAAVTA AIRTRWSPGM RFKMAFETED SSRISWFMGT ISSVEVADPV  300
RWPNSPWRLL QVTWDEPDLL QNVKHVSPWL VELVSHMPAL NLAHFSPPSK RPRIPQHPDF  360
PFESHFPTPM GARHANFGLS LSDLHLNKLQ TGLFHAGFHR LDHATPPSRI STGVIVSNST  420
FHDNNPILTE QQNMNVSDGS GYAIGQKGPC YRNCRNSDLS LETGHCKVFM QSEDVGRTLD  480
LSVFGSYEEL YGTLADMFGI EKSEIMSHVL YKDAAGAIKH TGDEPFCDFI KTARRLTILT  540
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-65733218353Auxin response factor 1
4ldy_B3e-65733218353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676549.10.0PREDICTED: auxin response factor 22-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM0RN950.0M0RN95_MUSAM; Auxin response factor
STRINGGSMUA_Achr11P00640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]