PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P00640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 541aa MW: 59958.9 Da PI: 7.7956 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 101 | 182 | 20 | 99 |
HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 20 kkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++ ++++ ktlt d ++ +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ l+++++r+ GSMUA_Achr11P00640_001 101 MNGIDSQEKPTSFAKTLTQSDANNgggfSVWKFRHIYRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL--RAENGDLRIGIRRA 182 55555555555555555555533357889***************************************..4488889****996 PP | |||||||
2 | Auxin_resp | 112 | 5.8e-37 | 228 | 311 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ + +FevvY+Pra t+eF+vk++ v +a+++++s+GmRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+ GSMUA_Achr11P00640_001 228 AATFATRRHPFEVVYYPRANTPEFCVKAAAVTAAIRTRWSPGMRFKMAFETEDSSRISWfMGTISSVEVADPVRWPNSPWRLLQ 311 57788999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-15 | 109 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.57E-12 | 112 | 181 | No hit | No description |
SMART | SM01019 | 5.0E-5 | 113 | 183 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-14 | 124 | 182 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-18 | 129 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.687 | 131 | 183 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.6E-33 | 228 | 311 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.017 | 463 | 541 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MKDHDRCLDS QLWHACAGGM VQMPAVNSRV YYFPQGHAEH AQGVVDFGTS RQIPPLILCR 60 VTAVKFMADK ETDEVFAKIQ MVPISNSELD CGEDGCLDLG MNGIDSQEKP TSFAKTLTQS 120 DANNGGGFSV WKFRHIYRGT PRRHLLTTGW SAFVNQKKLV AGDSIVFLRA ENGDLRIGIR 180 RAKRGGVGDG PETPSGWNPP GGSTGGNFTS SRGMRGRCRV TAVSVVEAAT FATRRHPFEV 240 VYYPRANTPE FCVKAAAVTA AIRTRWSPGM RFKMAFETED SSRISWFMGT ISSVEVADPV 300 RWPNSPWRLL QVTWDEPDLL QNVKHVSPWL VELVSHMPAL NLAHFSPPSK RPRIPQHPDF 360 PFESHFPTPM GARHANFGLS LSDLHLNKLQ TGLFHAGFHR LDHATPPSRI STGVIVSNST 420 FHDNNPILTE QQNMNVSDGS GYAIGQKGPC YRNCRNSDLS LETGHCKVFM QSEDVGRTLD 480 LSVFGSYEEL YGTLADMFGI EKSEIMSHVL YKDAAGAIKH TGDEPFCDFI KTARRLTILT 540 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 3e-65 | 7 | 332 | 18 | 353 | Auxin response factor 1 |
4ldy_B | 3e-65 | 7 | 332 | 18 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018676549.1 | 0.0 | PREDICTED: auxin response factor 22-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | M0RN95 | 0.0 | M0RN95_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr11P00640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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