PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P00410_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26673 Da PI: 5.1058 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ll d++++ G +W++ ++ g+ R++k+c++rw +yl GSMUA_Achr11P00410_001 14 KGPWSPEEDQLLMDYIQRNGHANWRALPKQAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++ ++++lG++ W++Ia++++ gRt++++k+ w+++l GSMUA_Achr11P00410_001 67 RGNFTEAEEDAIIGLHRELGNK-WSAIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.315 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.92E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.176 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.53E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVRAPCCQKV GLKKGPWSPE EDQLLMDYIQ RNGHANWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TEAEEDAIIG LHRELGNKWS AIAARLPGRT DNEIKNVWHT HLKKRANPEE 120 ATQESKRKMK RNAKASSESE QEEDLQPASP KEEEDGFSSE KVEGIDESFW LEALSIDEFA 180 AMEAPCAAAA SSNTLSLFSS TNSCDMEFWL DIFVREAEFL ENLPPQINPP DIRVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383020.1 | 1e-175 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 5e-74 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | M0RN72 | 1e-173 | M0RN72_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P00410_001 | 1e-174 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-74 | myb domain protein 14 |
Publications ? help Back to Top | |||
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