PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00260_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 219aa    MW: 24309.3 Da    PI: 10.2275
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.91.5e-1975166287
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                             Wt++e+laLi a+r+++ +lrrg+l++ +W+ev++ +           ++ +qC++k e+l+kry+ +++ + +  ts   s+++yf
  GSMUA_Achr11P00260_001  75 WTHEEILALIGAYRDKWYALRRGNLRASHWQEVADDVadrcpPGSSPPKTYIQCRHKVEKLRKRYRSERRKSLQFdTSLPPSSWVYF 161
                             *************************************77765555668999****************99988877699999****** PP

                trihelix  83 dqlea 87 
                             ++++a
  GSMUA_Achr11P00260_001 162 RKMHA 166
                             ***85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-1975166No hitNo description
SMARTSM005952.1E-482172IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAFSVDASSP KKDPPSPAVL AASAAAEAAA SRCQSPSPSP SPSPERSASL LPLPASLPPP  60
LPSSSATRRL AAPIWTHEEI LALIGAYRDK WYALRRGNLR ASHWQEVADD VADRCPPGSS  120
PPKTYIQCRH KVEKLRKRYR SERRKSLQFD TSLPPSSWVY FRKMHATEHG GNVEVGETHR  180
PSDCQSSVPP HPPSSDDGWR REQHPKSPPP HDQRRLRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384106.11e-53PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLM0RN571e-154M0RN57_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P00260_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-30Trihelix family protein