PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P00260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 219aa MW: 24309.3 Da PI: 10.2275 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.9 | 1.5e-19 | 75 | 166 | 2 | 87 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 Wt++e+laLi a+r+++ +lrrg+l++ +W+ev++ + ++ +qC++k e+l+kry+ +++ + + ts s+++yf GSMUA_Achr11P00260_001 75 WTHEEILALIGAYRDKWYALRRGNLRASHWQEVADDVadrcpPGSSPPKTYIQCRHKVEKLRKRYRSERRKSLQFdTSLPPSSWVYF 161 *************************************77765555668999****************99988877699999****** PP trihelix 83 dqlea 87 ++++a GSMUA_Achr11P00260_001 162 RKMHA 166 ***85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.9E-19 | 75 | 166 | No hit | No description |
SMART | SM00595 | 2.1E-4 | 82 | 172 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAFSVDASSP KKDPPSPAVL AASAAAEAAA SRCQSPSPSP SPSPERSASL LPLPASLPPP 60 LPSSSATRRL AAPIWTHEEI LALIGAYRDK WYALRRGNLR ASHWQEVADD VADRCPPGSS 120 PPKTYIQCRH KVEKLRKRYR SERRKSLQFD TSLPPSSWVY FRKMHATEHG GNVEVGETHR 180 PSDCQSSVPP HPPSSDDGWR REQHPKSPPP HDQRRLRDR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384106.1 | 1e-53 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | M0RN57 | 1e-154 | M0RN57_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P00260_001 | 1e-155 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-30 | Trihelix family protein |