PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P31360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 401aa    MW: 44557.4 Da    PI: 4.7609
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P31360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.4e-06344439
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            r C+ + e +   +C+++   lC +C  + H+       H++
  GSMUA_Achr10P31360_001  3 RLCDFCTERRSVVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44
                            68*****************************65677777766 PP
2zf-B_box23.98.6e-084689441
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                              C+++  ++++  C++ +  lC++C  ++H +      H++++
  GSMUA_Achr10P31360_001 46 LLCDRCTTQPAIVRCTEENASLCQNCDWNDHGRsaltseHKRQT 89
                            57*****************************5589999999876 PP
3CCT64.14.2e-22345388144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Re al+RYkeK+k RkFeKkirY+ RKa+A+ R+RvKGrFvk+ 
  GSMUA_Achr10P31360_001 345 RESALMRYKEKKKARKFEKKIRYALRKARADGRKRVKGRFVKAG 388
                             9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.655147IPR000315B-box-type zinc finger
CDDcd000212.24E-7347No hitNo description
PROSITE profilePS501199.6274390IPR000315B-box-type zinc finger
PfamPF006434.0E-54689IPR000315B-box-type zinc finger
CDDcd000211.12E-44790No hitNo description
SMARTSM003360.184890IPR000315B-box-type zinc finger
PfamPF062035.5E-17345387IPR010402CCT domain
PROSITE profilePS5101715.418345387IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGRLCDFCTE RRSVVYCRSD AASLCLSCDR NVHSANALSR RHSRTLLCDR CTTQPAIVRC  60
TEENASLCQN CDWNDHGRSA LTSEHKRQTI NCYSGCPSAA EFSRIWSFFE FPDMTEPDCE  120
QGLMTINENS AINCWRPPED SSTINIGSTL ETNDNRTNPE SSAVNAFSCA ADLPAGSMNS  180
TSKISCPGTE EIALCKDDFY EDLAVGDVDM TFENYEEFFG VSRDQTGDLF DDAGIDSYFD  240
MKENSTSNSI CDGEFAEEVK QMQATCRNVL SADSVMSNPG GHEDSSLVIT GHQVQSTITF  300
SFSGMTGESS AREYQDCGMS GMLVIGEPPW YHTGRESSSL PASSRESALM RYKEKKKARK  360
FEKKIRYALR KARADGRKRV KGRFVKAGEA YDYDPLSQTI C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381GRKRVKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381655.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1
RefseqXP_018674428.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1
SwissprotQ9LUA91e-111COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM0RN100.0M0RN10_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P31360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-100B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]