PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P30120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 303aa MW: 33254.4 Da PI: 8.2308

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P30120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.5	2.2e-33	17	108	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl k+++++ed +++++isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv ++ weF++++F++ GSMUA_Achr10P30120_001 17 FLLKTHQMVEDGATDDVISWGTEGTSFVVWKPVEFARDLLPVHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRR 94 9***************************************************************99.........****** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g++ ll++i r+k GSMUA_Achr10P30120_001 95 GEQGLLCNICRRKA 108 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.6E-36	11	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-33	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-55	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.5E-30	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-18	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-18	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-18	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MKKNSCAGRA GGGPAPFLLK THQMVEDGAT DDVISWGTEG TSFVVWKPVE FARDLLPVHF 60 KHNNFSSFVR QLNTYGFRKV VPDRWEFAND NFRRGEQGLL CNICRRKAAP PHVPSAGKSS 120 AGRNNRHPPP SLSCSDEAHS PSSACSLPTL QPPSEHLLDL TNENVKLRSD NQILNAELAQ 180 AMRRYRQLLG FLSGYVDVSR LNSGHPMQEA AALTAGAGHE TEAKKEEAEE GKLGEEQGLK 240 LFGVLLKSIE GEESGKNRRQ KRGRCEESID GCSVGERPIK MGFGWPWMGM STTVPHGSSN 300 VCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-20	8	106	19	129	Heat shock factor protein 1
5d5v_B	9e-20	8	106	19	129	Heat shock factor protein 1
5d5v_D	9e-20	8	106	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381467.1	0.0	PREDICTED: heat stress transcription factor B-1-like
Swissprot	Q67TP9	1e-78	HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBL	M0RMN6	0.0	M0RMN6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P30120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-59	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Grand X, et al. Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns. Plant Biotechnol. J., 2012. 10(7): p. 840-50 [PMID:22607456]