PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P30080_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 479aa MW: 51852.2 Da PI: 5.627

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P30080_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	242	301	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg +WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ GSMUA_Achr10P30080_001 242 MNDGLQWRKYGQKVAKGNPCPRAYYRCTVAqGCPVRKQVQRCLEDMSILITTYEGTHNHP 301 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-32	227	303	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	236	303	IPR003657	WRKY domain
PROSITE profile	PS50811	29.31	237	303	IPR003657	WRKY domain
SMART	SM00774	3.9E-37	242	302	IPR003657	WRKY domain
Pfam	PF03106	8.7E-27	243	301	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MSSKKKRKQR IMHIDLSLEA AEDEEREVEG GHAVGDQHHH QQEEEGGEKI ILSGAKEGSN 60 HREETPKEEK DQGCENPIEK VTIEDELCAL QAEMDRMKEE NKRLQEVIDR ISNDYYELQM 120 RLADIQQQGQ PKEHRVSLSL GGGSFQEPMK AGESEQIEEP SVAAQSGDLG DDNELGLSLS 180 LRTFAGPHAD TSEEKGKGSK IWQPLDDKLQ TGGFSTVTSQ SINPTTRKTR VSVRARCQGP 240 TMNDGLQWRK YGQKVAKGNP CPRAYYRCTV AQGCPVRKQV QRCLEDMSIL ITTYEGTHNH 300 PLPVGATALA FAAPTAATFM LPNDAPSSSS TADTAPSSYL NPYLANPSPH LPPMNSLTSS 360 TSYSGIFGAA SSNDHGRQQP SSATYPWAAS SIPNPGFAGG SSWLPHKGTW NGESANVSLA 420 GNIGAIASDS KFTAAVAAAI SSFINKDSQT WAQKDGESSS RSSSKWVLES LSNSTKDLS

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MSSKKKRKQR IMHIDLSLEA AEDEEREVEG GHAVGDQHHH QQEEEGGEKI ILSGAKEGSN  60
HREETPKEEK DQGCENPIEK VTIEDELCAL QAEMDRMKEE NKRLQEVIDR ISNDYYELQM  120
RLADIQQQGQ PKEHRVSLSL GGGSFQEPMK AGESEQIEEP SVAAQSGDLG DDNELGLSLS  180
LRTFAGPHAD TSEEKGKGSK IWQPLDDKLQ TGGFSTVTSQ SINPTTRKTR VSVRARCQGP  240
TMNDGLQWRK YGQKVAKGNP CPRAYYRCTV AQGCPVRKQV QRCLEDMSIL ITTYEGTHNH  300
PLPVGATALA FAAPTAATFM LPNDAPSSSS TADTAPSSYL NPYLANPSPH LPPMNSLTSS  360
TSYSGIFGAA SSNDHGRQQP SSATYPWAAS SIPNPGFAGG SSWLPHKGTW NGESANVSLA  420
GNIGAIASDS KFTAAVAAAI SSFINKDSQT WAQKDGESSS RSSSKWVLES LSNSTKDLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	229	305	1	76	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381463.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	M0RMN2	0.0	M0RMN2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P30080_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8022	34	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	4e-54	WRKY DNA-binding protein 9