PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P29990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 382aa    MW: 42747.7 Da    PI: 6.6285
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P29990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box284.6e-092366340
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            +r C+ + + +++++C  ++ +lC++C ++ H+       H++v
  GSMUA_Achr10P29990_001 23 ARACDGCARRRARWYCPADDAFLCQNCDFSVHSAnplarrHRRV 66
                            578*****************************667888889877 PP
2CCT66.95.6e-23332375144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             R+a+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  GSMUA_Achr10P29990_001 332 RQARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 375
                             99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.682168IPR000315B-box-type zinc finger
SMARTSM003361.4E-112168IPR000315B-box-type zinc finger
PfamPF006439.2E-72366IPR000315B-box-type zinc finger
CDDcd000212.11E-92456No hitNo description
PfamPF062031.8E-17332374IPR010402CCT domain
PROSITE profilePS5101715.914332374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSHFEKQRSP EVVASSAVAG KTARACDGCA RRRARWYCPA DDAFLCQNCD FSVHSANPLA  60
RRHRRVRLRA ADVDSEESSP SWLRGFKRKA RTPRAHQHEK TTSGARRLRP TTVPELIETS  120
VDETEEEEEQ LLYCVPVVDP ALAEFCSPPM LDDSNTCSGD ETKPTMDSTD GTPASTSTVD  180
TANRLAPFLP SVTDLAEFAA DMESLLGGGL DSRDGSFSME KLGLVNSMED NVDYCLDKEE  240
LEEENMEVAS EQQQVTKKAK LRLDYEAVIS AWSSYGSSPW TDGERPQINL DYYWPDYMVS  300
SVTPSLKERG RGETPGTGHG SDTGVGFVDV GRQARVTRYR EKRRTRLFAK KIRYEVRKLN  360
AEKRPRMKGR FVKRAPGSAF AH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342358RRTRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6424362e-38DQ642436.1 Zea mays RFLP probe umc108 (CBM 5.07) genomic sequence.
GenBankEU9567872e-38EU956787.1 Zea mays clone 1573947 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381448.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLM0RMM30.0M0RMM3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P29990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-39B-box type zinc finger protein with CCT domain