PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P29860_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 165aa MW: 18434.9 Da PI: 5.0928 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.4 | 3.1e-07 | 10 | 38 | 27 | 55 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++++lg++ ++e+Aa+a++ a++k++g GSMUA_Achr10P29860_001 10 VCASVYLGSYVSEEMAARAHDLAALKYWG 38 579************************98 PP | |||||||
2 | AP2 | 56.8 | 5.7e-18 | 83 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++k+g+W A+I + g k k ++lg+f+t+eeAa+a++ a+ +l+g GSMUA_Achr10P29860_001 83 SIYRGVTRRRKDGKWQARIGRV---GdlKDaKDIYLGTFDTEEEAAEAYDIAAIELRG 137 57*****************998...664458*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.639 | 1 | 48 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-4 | 8 | 54 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-4 | 8 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-7 | 13 | 49 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-8 | 13 | 49 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-18 | 83 | 147 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.20E-23 | 83 | 147 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 83 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-19 | 84 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.902 | 84 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-28 | 84 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MVIAIGCCCV CASVYLGSYV SEEMAARAHD LAALKYWGPG PTTKLNFPVS DYEKELETMK 60 TMSQEEFVAY VRRKSSCFSR GASIYRGVTR RRKDGKWQAR IGRVGDLKDA KDIYLGTFDT 120 EEEAAEAYDI AAIELRGVHA VTNFDLSNYD EGGIKRSEDP CTLEM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 92 | RRKSSCFSRGASIYRGVTRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381435.1 | 1e-107 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
Swissprot | Q5YGP7 | 9e-61 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | M0RML0 | 1e-119 | M0RML0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P29860_001 | 1e-120 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 9e-52 | AP2 family protein |