PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P29790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 261aa MW: 28376.3 Da PI: 7.2439 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6.2e-32 | 38 | 93 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 ++ Y+eClkNhAaslGgha+DGCgEfm s+ ++ +++++l+C ACgCHRnFHRr + GSMUA_Achr10P29790_001 38 EFLYRECLKNHAASLGGHALDGCGEFMHSPAADpADPSSLRCVACGCHRNFHRRLP 93 679*****************************99*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.6E-26 | 39 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.575 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.9E-29 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-20 | 41 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 139 | 201 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-16 | 140 | 200 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-21 | 143 | 199 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDHTTKVAEP ETEGKTLSFP NGTLRKHHQR QPATAVEEFL YRECLKNHAA SLGGHALDGC 60 GEFMHSPAAD PADPSSLRCV ACGCHRNFHR RLPDPLHHRH RLHDREGEDE RNREGGDEEE 120 PIVTPIAAVA AATPMAADVA QPRKRFRTRF TPGQKERMQE LSERLGWRMQ KRDEGQVEEC 180 CRQIGVDKGV FKVWMHNNKH AFFGQARKGG AGGGCGGSRT GNGVDGGDVV GRVEETSHSA 240 NGVDDSGGGN GHAMNGSSSS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-17 | 144 | 201 | 18 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381426.1 | 1e-168 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 1e-53 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | M0RMK3 | 0.0 | M0RMK3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P29790_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-25 | homeobox protein 34 |
Publications ? help Back to Top | |||
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