PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P29680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 289aa    MW: 32601.2 Da    PI: 6.9265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P29680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.3e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd++l+ +v+++G g+W++ +++ g+ R++k+c++rw +yl
  GSMUA_Achr10P29680_001 14 KGPWTVEEDQKLLAYVEKHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg ++++E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
  GSMUA_Achr10P29680_001  67 RGEFSPQEEKTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112
                             899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.661961IPR017930Myb domain
SuperFamilySSF466898.99E-3211108IPR009057Homeodomain-like
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001679.98E-111661No hitNo description
PROSITE profilePS5129425.22662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2765116IPR009057Homeodomain-like
SMARTSM007171.0E-1766114IPR001005SANT/Myb domain
PfamPF002497.9E-1767112IPR001005SANT/Myb domain
CDDcd001679.65E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSPCCDKV NLKKGPWTVE EDQKLLAYVE KHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGEF SPQEEKTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLAKWE  120
SARLEAEARL ARESKLRAAS ERKNTPGENV DLESPTSTLS FPENRPPTTE FSGNDTTDCL  180
TGFSVEAFDG EAPWLSEPYA SQAGCSWGQF GAGFTGMLLG EFGEQKTRDH SRDSHTNGHE  240
TCADEEEEEG EENRNYWNSI LNWVNSPSSS SSPKTLRDCS FSRSLLPLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381411.11e-173PREDICTED: myb-related protein Hv1
RefseqXP_018674907.11e-173PREDICTED: myb-related protein Hv1
SwissprotQ9LXF12e-91MYB16_ARATH; Transcription factor MYB16
TrEMBLM0RMJ20.0M0RMJ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P29680_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.14e-75myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]