PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P29600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family E2F/DP
Protein Properties Length: 397aa    MW: 44271.4 Da    PI: 10.2507
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P29600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.25.1e-222085171
                 E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                            rk+ksL+ll+ +f++l+ +   + + l+++a++L    v  +rRRiYDi+N++e+++++++k+kn+++w+g
  GSMUA_Achr10P29600_001 20 RKQKSLGLLCANFVSLYDRDGVDSIGLDDAARRL---GV--ERRRIYDIVNIMESVGVLARKAKNAYSWIG 85
                            79*****************999************...**..****************************98 PP
2E2F_TDP68.48.9e-22160239171
                 E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                             r+eksL+ lt++f+kl+ ++++++++l+++a+ L+        +++k RR+YDi+NVL+++nliek     +k+++rw g
  GSMUA_Achr10P29600_001 160 RREKSLGTLTENFIKLFLTTDRDTISLDDAARLLLGAihdasYMRTKIRRLYDIANVLSSINLIEKtqveARKPAFRWLG 239
                             689*******************************998999*999**********************999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-251686IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.7E-141984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-252085IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-192185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-22157241IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.6E-28160239IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-19162239IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-11162240IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSSSSSHPLD SGMRHHAYSR KQKSLGLLCA NFVSLYDRDG VDSIGLDDAA RRLGVERRRI  60
YDIVNIMESV GVLARKAKNA YSWIGFSGIP KALDRLEDEA RSGITRSEGS GFKVWFELSF  120
QFQLLVSAAR KQYEKPSQII NSSSLSSGAC CKARSATANR REKSLGTLTE NFIKLFLTTD  180
RDTISLDDAA RLLLGAIHDA SYMRTKIRRL YDIANVLSSI NLIEKTQVEA RKPAFRWLGL  240
KEGKMKADNN VTVVAPGPKK PTKRAFGTEI TNVDSKKSRP NLTADKKPTK VQTKDEDLNE  300
GNRVALKHLG SKSGYAFGPF HPNGVMKRGD DVEVKCGKGV QDWESLAASF RPQYHNQALS  360
ELFAHYVEAW KTWYVEATKG SRNLQQPFSK LVTSDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A9e-37192333232Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381400.10.0PREDICTED: E2F transcription factor-like E2FE isoform X3
TrEMBLM0RMI40.0M0RMI4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P29600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-100DP-E2F-like 1