PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P29280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 386aa    MW: 42667.6 Da    PI: 5.0905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P29280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171057148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT  Ed llv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  GSMUA_Achr10P29280_001 10 KGPWTSAEDALLVEYVKEHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 57
                            79******************************************9986 PP
2Myb_DNA-binding39.51.3e-1263123146
                             TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46 
                             +g++T+eE++l++++++++G++                +   Ia  ++ gRt++++k++w++
  GSMUA_Achr10P29280_001  63 KGAFTPEEEQLIIKLHAKMGNKwaqmatqfivchrdclSYFVIAVLLP-GRTDNEIKNFWNT 123
                             799*********************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.117561IPR017930Myb domain
SMARTSM007172.2E-15959IPR001005SANT/Myb domain
SuperFamilySSF466896.22E-269121IPR009057Homeodomain-like
PfamPF002491.1E-151057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241164IPR009057Homeodomain-like
CDDcd001678.27E-121257No hitNo description
SMARTSM007172.3E-1162127IPR001005SANT/Myb domain
PROSITE profilePS5129414.14862129IPR017930Myb domain
PfamPF002492.6E-1163123IPR001005SANT/Myb domain
CDDcd001677.92E-965123No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2365127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEWDGQVLKK GPWTSAEDAL LVEYVKEHGE GNWNAVQKNS GLSRCGKSCR LRWANHLRPN  60
LKKGAFTPEE EQLIIKLHAK MGNKWAQMAT QFIVCHRDCL SYFVIAVLLP GRTDNEIKNF  120
WNTRIKRLQR AGLPLYPPNV CCQASDGDQQ TQIVSSVTQH QNDILQGNNF NFPDIVFENF  180
DPDHGDLSYA SSFPDISMTF GLDNPYDPDA NIKNLATFGG EISLSHALSN GNFSASRPLP  240
GAWKLELPSL QHAEIDDSSW TAYHSTAHLE AVDTYVESSP TAVSLQSECI SPRSSGLLEV  300
MLHEAQALSN SKRHSSQKSS SSSAITHNEM LESSGLNFFD IGWEDCNDPI SPLGCSAASI  360
FNEFMPPING SSIHEFLPSE STTGAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2781275106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674661.10.0PREDICTED: transcription factor GAMYB-like isoform X2
TrEMBLM0RMF20.0M0RMF2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P29280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-68myb domain protein 33