PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P29200_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34812.6 Da PI: 9.5983 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.2e-51 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+deelvv+yL++k++ ++l++ +i+e+d+yk++Pw+Lp k+ ++kewyfF++rd+ky++g+r+nr++ +gyWkatg GSMUA_Achr10P29200_001 13 LPPGFRFHPSDEELVVHYLCRKITCQRLPV-PIIAEIDLYKYNPWELPDKALFGQKEWYFFTPRDRKYPNGSRPNRSAGKGYWKATG 98 79****************************.88***************7777899******************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ +k ++++ +kk Lvfy+g+ap+g+ktdW+mheyr+ GSMUA_Achr10P29200_001 99 ADKPISTKgSKTTLAIKKALVFYSGKAPRGVKTDWIMHEYRV 140 *******95566799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.063 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-26 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MARNRDAEAE LNLPPGFRFH PSDEELVVHY LCRKITCQRL PVPIIAEIDL YKYNPWELPD 60 KALFGQKEWY FFTPRDRKYP NGSRPNRSAG KGYWKATGAD KPISTKGSKT TLAIKKALVF 120 YSGKAPRGVK TDWIMHEYRV ADTGRRANKG SLRLDDWVLC RLYNKKNTWE KKQQQRATSF 180 GEPIDSSDEA WSAADSFRTP DSEIENDFVL PHFNDLGSPS QASAGDFSLR FMHYMQTLLK 240 QLVSFADKDL QLLLIWTENI QYSISTTDSA IILSIKANST RITNFVHFNL PKKAYIGIDV 300 TIST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-95 | 1 | 171 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381356.1 | 1e-169 | PREDICTED: NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 1e-104 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | M0RME4 | 0.0 | M0RME4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P29200_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 5e-88 | NAC family protein |