PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P28920_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 423aa    MW: 46204.8 Da    PI: 6.914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P28920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08256303455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  GSMUA_Achr10P28920_001 256 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIIIYVQSLQ 303
                             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.59E-10250307No hitNo description
SuperFamilySSF474598.51E-16250321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-16252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6256303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-9258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MYCGLPDQLP SCLLDLNWDQ TMDTAGHFES VLSSIAPPSQ SIGNSSDGTW PRSHHIGVRL  60
NSPPKPNLSV LGHIRHLQQE ATGGVAVSTQ LDQFYSFGGR NYGHLAPQFG LLDTLQMELP  120
LRLNANNGEL MNAREESSLS DPTTRGVSSG GAARSNSKKR KAPPTDKVKG DAILANSAID  180
PPKVAKEEDS DAKRCRSMVK NRDENDAVKP KAEQNDGCSS NGNGGQKQCR ENTAKSTEPP  240
KDYIHVRARR GQATDSHSLA ERVRREKISQ RMKLLQDLVP GCNKVTGKAV MLDEIIIYVQ  300
SLQRQVEFLS MKLATVNPHL DFNNLSNLLP KDVHQTCGAM PNSVYSLEAS GVAPPYINQP  360
SLHCVLPDGM EIHRSADLLG STLHQNVNTH QPLLAGFENS PSQLGNFWED GLQNVSQMDI  420
GHD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381314.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLM0RMB60.0M0RMB6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P28920_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-55bHLH family protein