PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P28190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 377aa    MW: 41370.6 Da    PI: 7.3646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P28190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30111168359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tY+g+Hnh+
  GSMUA_Achr10P28190_001 111 DGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILITTYQGTHNHP 168
                             9**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3194170IPR003657WRKY domain
SuperFamilySSF1182906.28E-27103170IPR003657WRKY domain
PROSITE profilePS5081128.633104170IPR003657WRKY domain
SMARTSM007749.3E-36109169IPR003657WRKY domain
PfamPF031069.6E-27111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDEVREENDR LKTILAHIIK EYQHLQKQYF DVVQQEQSKR PLETTNPSDV EEPDELVSLS  60
LGTKEPGEPR PPTEILMMSL GTGDDEVPQQ LPVKKARVTV RARCDAPTMI DGCQWRKYGQ  120
KIAKGNPCPR AYYRCTVAAG CPVRKQVQRC AEDMSILITT YQGTHNHPLP ISATAMASTA  180
AASMHMSGSS ASEQGMGEAI GSLSARQQSS YLPIPSPSPA SSYSTITLDL TAPPSSTSQL  240
SQLGRFPCHE SRAYHDRPSQ DSFCQSILQK AIDTTAAPNL NQHPLADTIA KAITSDPNFQ  300
SAVAAAVTSY VGDHRSRNGR EGLSSFLNET YDASVIKWKR HHCAPHKMLD NSGKGIISPT  360
LYSSPGFYGL FLHKEHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-201091701777Probable WRKY transcription factor 4
2lex_A4e-201091701777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381872.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-68WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLM0RM430.0M0RM43_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P28190_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-54WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]