PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P27810_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 305aa MW: 33798.8 Da PI: 5.4765 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 93.3 | 2.6e-29 | 1 | 85 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 +++d++++ +i w +++nsfvv+d+ f++ +Lp++Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ll+ GSMUA_Achr10P27810_001 1 MVDDPSTNAVIAWGRDNNSFVVVDPFAFSQLLLPSHFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTNLLR 78 899*******************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 i r++s GSMUA_Achr10P27810_001 79 LIVRRNS 85 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-31 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.6E-25 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-28 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-39 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-9 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-9 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MVDDPSTNAV IAWGRDNNSF VVVDPFAFSQ LLLPSHFKHG NFSSFVRQLN TYGFRKVDPD 60 RWEFAHASFL RGQTNLLRLI VRRNSGCGKK NERGEEEGEE EEGMEERVAA EVVRLKQEQR 120 RIAERVEEMW RRVQETERKP RQMLAFLVKV AGDPKLLGRL GAGPAPGAIE GGEKRARLRS 180 GDEYERVLEM EGGVGRWQFD GQSMVAGDGE EGMMLCGGDG GGAHQFPGTS DPIGFYGGPV 240 WVGGEFGGVE GDGLGGGSAA YPFPSHPAFN KATDHESLYF GIKKCLHLNQ QNVFDFYAKI 300 SCENY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-19 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-19 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-19 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381200.1 | 0.0 | PREDICTED: heat stress transcription factor C-2b-like | ||||
Swissprot | Q6EUG4 | 2e-72 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | M0RM05 | 0.0 | M0RM05_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P27810_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-46 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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