PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P27340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 275aa    MW: 30669.1 Da    PI: 10.4164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P27340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.7e-32198256159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk++er aedp++v++tYeg+H h+
  GSMUA_Achr10P27340_001 198 LDDGYKWRKYGQKVVKDTQHPRSYYRCTQGDCRVKKRIERLAEDPRMVITTYEGRHAHS 256
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32183256IPR003657WRKY domain
SuperFamilySSF1182901.01E-27190257IPR003657WRKY domain
PROSITE profilePS5081129.034193258IPR003657WRKY domain
SMARTSM007741.1E-34198257IPR003657WRKY domain
PfamPF031064.5E-24199255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSSVLATFRR LQKGLCSSHG LSYLTPHSLV PCEVGRDQEE MFQPATACGV LLNQGWVGSP  60
EIMVTSHMGF DLRASPPPPL LGSPCFAGGG GGVAASHPRG NLLPFPTKHG DGNRPAQLGA  120
SSSSNVRPWP EEDALNKKEL LAGNKKKKKK KKKNSFVGNE NMVSNLSIGA TRKKKLKVRK  180
KLREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKDTQHPRS YYRCTQGDCR VKKRIERLAE  240
DPRMVITTYE GRHAHSPSHH EEESQASSKL NLFWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25189255874Probable WRKY transcription factor 4
2lex_A3e-25189255874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152KKKKKKKKK
2146152KKKKKKK
3176182KVRKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381151.20.0PREDICTED: probable WRKY transcription factor 20 isoform X1
TrEMBLM0RLV80.0M0RLV8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-42WRKY DNA-binding protein 13