PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 351aa    MW: 39126.4 Da    PI: 8.2691
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.31.8e-091861340
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            +r C+ + + ++++fCe ++ +lC+ C ++ H+       H++v
  GSMUA_Achr10P26880_001 18 ARPCDGCLRRRARWFCEADDAFLCQACDVSVHSAnplarrHRRV 61
                            678*****************************667888889877 PP
2CCT66.29.3e-23299342144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk++
  GSMUA_Achr10P26880_001 299 REARVSRYREKRRRRLFSKKIRYEVRKLNAEKRPRMKGRFVKRP 342
                             9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8221663IPR000315B-box-type zinc finger
SMARTSM003361.0E-121663IPR000315B-box-type zinc finger
PfamPF006431.5E-71861IPR000315B-box-type zinc finger
CDDcd000219.98E-121963No hitNo description
PfamPF062038.5E-18299341IPR010402CCT domain
PROSITE profilePS5101716.023299341IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGCTEKQRPA SAVGAKTARP CDGCLRRRAR WFCEADDAFL CQACDVSVHS ANPLARRHRR  60
VRLKTASFSG FLSTTEDGLG DHATPAWLHG CKRKPRTPRG KPGLLEQAHV SAVPTADGLG  120
GFHASDLELE QFASDMEVLL GSGLDNDSFC IDGLGWMNGT VEDDSDGQVK VEVDLDVART  180
SSNFRMEMDL PKWKLDLGFD SQMMAVEVDE HKPLQQAETA SDNYRAEAAA KRKMILRLDY  240
EAVIAACSSN VLSLWIDGVR PDFDPNDSWP DVPAMAGGAA AMKEMHYQQE VAHAADEGRE  300
ARVSRYREKR RRRLFSKKIR YEVRKLNAEK RPRMKGRFVK RPAFPAALAC R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313KRRRRL
2310325RRRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723462e-32AK072346.1 Oryza sativa Japonica Group cDNA clone:J023048G07, full insert sequence.
GenBankAK1203142e-32AK120314.1 Oryza sativa Japonica Group cDNA clone:J013055L13, full insert sequence.
GenBankAK3565352e-32AK356535.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036A10.
GenBankAK3583702e-32AK358370.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075C13.
GenBankAP0048882e-32AP004888.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0617A09.
GenBankAP0053192e-32AP005319.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0643A10.
GenBankAP0149582e-32AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-32CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankJQ7912382e-32JQ791238.1 Hordeum vulgare subsp. vulgare cultivar OWB-D K (K) gene, partial cds.
GenBankJQ7912392e-32JQ791239.1 Hordeum vulgare subsp. vulgare cultivar OWB-R K (K) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381104.11e-162PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLM0RLR20.0M0RLR2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-58B-box type zinc finger protein with CCT domain