PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 463aa    MW: 51053.3 Da    PI: 9.3255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-1767113148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT++Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  GSMUA_Achr10P26610_001  67 KGGWTPQEDETLRKAVEAYKGRSWKKIAEFFP-DRTEVQCLHRWQKVL 113
                             688*****************************.************986 PP
2Myb_DNA-binding62.77.2e-20119165148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+WT+eEde+++ +v+++G++ W+ Ia+ ++ gR +kqc++rw+++l
  GSMUA_Achr10P26610_001 119 KGPWTPEEDEKIISLVAKYGPKKWSIIAKSLP-GRIGKQCRERWHNHL 165
                             79******************************.*************97 PP
3Myb_DNA-binding55.41.4e-17171214146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr10P26610_001 171 KDAWTVEEELALMNAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 214
                             679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.55262113IPR017930Myb domain
SMARTSM007173.8E-1566115IPR001005SANT/Myb domain
PfamPF002495.7E-1667113IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-1568123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-1969122IPR009057Homeodomain-like
CDDcd001673.20E-1370113No hitNo description
PROSITE profilePS5129432.917114169IPR017930Myb domain
SuperFamilySSF466891.31E-32116212IPR009057Homeodomain-like
SMARTSM007178.1E-19118167IPR001005SANT/Myb domain
PfamPF002495.7E-19119165IPR001005SANT/Myb domain
CDDcd001678.52E-17121165No hitNo description
Gene3DG3DSA:1.10.10.601.6E-28123172IPR009057Homeodomain-like
PROSITE profilePS5129423.084170220IPR017930Myb domain
SMARTSM007171.5E-16170218IPR001005SANT/Myb domain
PfamPF002497.4E-16171214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-23173220IPR009057Homeodomain-like
CDDcd001671.31E-12173216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGDGGLLAVA TMKVEQSCVE NKQSAAASSS SLSEGSYGLS RMSPAVSSPR TSSPSKRRIS  60
GPIRRAKGGW TPQEDETLRK AVEAYKGRSW KKIAEFFPDR TEVQCLHRWQ KVLNPELIKG  120
PWTPEEDEKI ISLVAKYGPK KWSIIAKSLP GRIGKQCRER WHNHLDPTIK KDAWTVEEEL  180
ALMNAHRVHG NKWAEIAKVL PGRTDNSIKN HWNSSLKKKL DLFLVTAFSG SASSMDSDSN  240
REALANLTVR GVNDPDTGYS MRDPMSDVCP RSDPGTELAE CSNTGENDQL DDTSQPALAL  300
PSESPHAIVT SPSGYLTPSS VTGKNPVQSV ESILKSAARS FPNTPSIFRR RKRDAEMSHA  360
SGSSPSQMDR IKFLDSSDSA EGKSRHNSEA TNSFNESPPY RLRSKRTAII KSVEKQLDFT  420
LEKNECNGNV IPQSLAMHSS SHSSSTIIPT IQERELTERP IVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-72662205159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-72662205159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381073.10.0PREDICTED: myb-related protein B-like
RefseqXP_009381074.10.0PREDICTED: myb-related protein B-like
TrEMBLM0RLN50.0M0RLN5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-106myb domain protein 3r-5