PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P26180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 332aa MW: 36520.4 Da PI: 8.4757

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P26180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.6e-56	15	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+ +yL +k+ +++++ ++i+evd++k+ePw+Lp+k+k +e+ewyfFs rd+ky+tg r+nrat +gyWkatg GSMUA_Achr10P26180_001 15 LPPGFRFHPTDEELIAHYLLQKALDSSFTS-RAIAEVDLHKCEPWELPEKAKMGEEEWYFFSLRDRKYPTGLRTNRATGAGYWKATG 100 79***********************999.89***********99999****************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 kdke++s+ +++lvg+kktLvfy+grapkgek++Wvmheyrle GSMUA_Achr10P26180_001 101 KDKEIYSSrTKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 143 **9866778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-63	7	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.819	15	167	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MTMFGNHFHN IEPQLPPGFR FHPTDEELIA HYLLQKALDS SFTSRAIAEV DLHKCEPWEL 60 PEKAKMGEEE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDKEIYSSRT KSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLEGRFAFHF LCGSSKDEWV ISRVFKKCGT GSGGKKNRLA 180 LAGEGSYSDS TISAGSPSCG SLASHPDMPR FPAAATLLDQ DSCFHESSEG EPVPCYSTAG 240 PSFRLPFPHT TATLPACGAL FPSLRAMQPG LQLPFYLSGL APMPLGGSGG LDARSNHERG 300 CPRSDLDGKA VSAARGHRMP LGASELDCIW TS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	15	167	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	15	167	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	15	167	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	15	167	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	15	167	20	168	NAC domain-containing protein 19
3swm_B	4e-55	15	167	20	168	NAC domain-containing protein 19
3swm_C	4e-55	15	167	20	168	NAC domain-containing protein 19
3swm_D	4e-55	15	167	20	168	NAC domain-containing protein 19
3swp_A	4e-55	15	167	20	168	NAC domain-containing protein 19
3swp_B	4e-55	15	167	20	168	NAC domain-containing protein 19
3swp_C	4e-55	15	167	20	168	NAC domain-containing protein 19
3swp_D	4e-55	15	167	20	168	NAC domain-containing protein 19
4dul_A	3e-55	15	167	17	165	NAC domain-containing protein 19
4dul_B	3e-55	15	167	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381836.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	M0RLJ2	0.0	M0RLJ2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P26180_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9940	35	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	4e-95	NAC family protein