PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P25700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 319aa    MW: 35239.8 Da    PI: 6.8684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P25700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141466148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                            +g+W+ eEd++l++ ++ +G g+W + ++        ++R++k+c++rw +yl
  GSMUA_Achr10P25700_001 14 KGPWSSEEDQKLIQHIQNHGHGCWIALPKLAVclnagLNRCGKSCRLRWTNYL 66
                            79**************************9999999****************97 PP
2Myb_DNA-binding50.74.1e-1672115146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r +++ eE++ +v+++  lG++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr10P25700_001  72 REKFSREEEDTIVHLHSILGNK-WSSIAAHLP-GRTDNDIKNFWNS 115
                             789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-24569IPR009057Homeodomain-like
PROSITE profilePS5129412.578966IPR017930Myb domain
SuperFamilySSF466891.68E-2811113IPR009057Homeodomain-like
SMARTSM007177.8E-111368IPR001005SANT/Myb domain
PfamPF002493.0E-131466IPR001005SANT/Myb domain
CDDcd001673.12E-91666No hitNo description
PROSITE profilePS5129425.85167121IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2570122IPR009057Homeodomain-like
SMARTSM007171.6E-1471119IPR001005SANT/Myb domain
PfamPF002491.3E-1472116IPR001005SANT/Myb domain
CDDcd001672.54E-1074114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPCCDEH GLKKGPWSSE EDQKLIQHIQ NHGHGCWIAL PKLAVCLNAG LNRCGKSCRL  60
RWTNYLRPDI KREKFSREEE DTIVHLHSIL GNKWSSIAAH LPGRTDNDIK NFWNSCLKKK  120
LIRMGVDPRT HRPRAEELIA GLQQHLSHTV HEEFLERVPR EEHAAQLQAA ARALATLQFL  180
DSLLQPSATV GISSGNVNSL DSIISTMEPM KLLETAIPSL SSFPSPGPSP ASNSQARHHC  240
FPGMSYSIEQ PLGSAINEES SFVVLSEEER NGMRAYEVSS PFLLPPLCDF SWGNGGAGCS  300
TSNYGGSLSP SSLWPENLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271212125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381831.10.0PREDICTED: transcription factor MYB39-like
TrEMBLM0RLE40.0M0RLE4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P25700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-75myb domain protein 93