PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P25520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 330aa    MW: 36658.7 Da    PI: 10.7976
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P25520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.73.4e-41882364132
                     TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec..eaesss 79 
                             + dr+ski T++g+RdRR+Rls e+a++fFdLqd+LGfd+ skt++WL++++k+ai+elt            +s+as++   ++s  
  GSMUA_Achr10P25520_001  88 RNDRNSKILTAKGPRDRRIRLSNEVARKFFDLQDMLGFDQGSKTVQWLFNMSKHAIQELTAIsdpqlgglgIQSPASFTlgLEKSTM 174
                             78***********************************************************99999999984444445557333333 PP

                     TCP  80 ssasnsssg.........kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                             +s+s+ +s+         k++k++++  k++ +a s+l  a+esrakarararert+ek r+
  GSMUA_Achr10P25520_001 175 ESDSQGKSTtklvtatsvKNSKNEKQLIKPSGNAGSNLMRARESRAKARARARERTTEKRRM 236
                             333333333568888876566666666666666665666666*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.42288146IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-4088236IPR005333Transcription factor, TCP
PROSITE profilePS5137011.66216233IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLPFPHCSNS LEKPFGKQLE LNPIPPPSNP YFPIFASDGL PLPLGAVTGA VPLPSPPSLP  60
PVDNSLATAS PLMRKKRSGS FTRKRSWRND RNSKILTAKG PRDRRIRLSN EVARKFFDLQ  120
DMLGFDQGSK TVQWLFNMSK HAIQELTAIS DPQLGGLGIQ SPASFTLGLE KSTMESDSQG  180
KSTTKLVTAT SVKNSKNEKQ LIKPSGNAGS NLMRARESRA KARARARERT TEKRRMWLLS  240
STIASHATRN EGSHLLNLSS SLLGSIAEME ARQRSSSHTQ RIRLSDQRNY EFPAQDGPCL  300
IPIFGYSEKI ADRNDMDNIL QEQSDMERMP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7751021e-177HM775102.1 Strelitzia nicolai voucher UC:MB0601 teosinte branched1-like TCP transcription factor (TBL1a) gene, partial cds.
GenBankHM7751391e-177HM775139.1 Costus spicatus voucher USNM:2002-127 teosinte branched1-like TCP transcription factor (TBL1a) gene, partial cds.
GenBankHM7751431e-177HM775143.1 Musa hybrid cultivar voucher UC:MB0603 teosinte branched1-like TCP transcription factor (TBL1a.1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380962.10.0PREDICTED: transcription factor TEOSINTE BRANCHED 1-like isoform X1
TrEMBLM0RLC60.0M0RLC6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P25520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-23TCP domain protein 12