PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P25230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 252aa MW: 28556.2 Da PI: 7.5601 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.1 | 1.8e-35 | 23 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d+++++++sw ++ ++fvv+ + efa++vLp+yFkh+nf+SFvRQLn+YgF+kv e+ weF+++ F+ GSMUA_Achr10P25230_001 23 FLTKTYQLVDDPATDHIVSWGdDRTSTFVVWRPPEFARDVLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFR 100 9********************667799***************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 kg+k+ll++i+r+k+ GSMUA_Achr10P25230_001 101 KGEKHLLCEIHRRKT 115 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.1E-37 | 14 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-57 | 19 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.01E-32 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.2E-20 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.9E-31 | 23 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-20 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-20 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEMCWEGGGG VAAETNKPLP APFLTKTYQL VDDPATDHIV SWGDDRTSTF VVWRPPEFAR 60 DVLPNYFKHN NFSSFVRQLN TYGFRKVVPE RWEFANEFFR KGEKHLLCEI HRRKTCSPSS 120 SSFPFASSPP SFPLYHHFDD YRLAATAAAL LDENERLRRS NAALLSELAH MRKLYNDIIY 180 FVQNHNRGCN EESSSAKPKL FGVPLDGCTS SSNNKRGLDV HETTTSPSTK PRLVLDKEDL 240 GLNLMPSSPP PC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 8 | 115 | 17 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 8 | 115 | 17 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 8 | 115 | 17 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101700 | 5e-38 | AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence. | |||
GenBank | AY344484 | 5e-38 | AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds. | |||
GenBank | CT831026 | 5e-38 | CT831026.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111P18, full insert sequence. | |||
GenBank | CU406354 | 5e-38 | CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence. | |||
GenBank | CU406884 | 5e-38 | CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380920.1 | 1e-135 | PREDICTED: heat stress transcription factor B-4c-like | ||||
Swissprot | Q9C635 | 9e-82 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | M0RL97 | 0.0 | M0RL97_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P25230_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-64 | heat shock transcription factor B4 |