PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P24560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 305aa    MW: 34352.8 Da    PI: 6.7739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P24560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49.1e-201461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
  GSMUA_Achr10P24560_001 14 KGPWTPEEDQKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k+ w+++l
  GSMUA_Achr10P24560_001  67 RGNFSPEEEQTILNLHSILGNK-WSAIAMHLP-GRTDNEIKNLWHTHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.312961IPR017930Myb domain
SuperFamilySSF466891.05E-3211108IPR009057Homeodomain-like
SMARTSM007172.4E-161363IPR001005SANT/Myb domain
PfamPF002491.3E-181461IPR001005SANT/Myb domain
CDDcd001671.81E-131661No hitNo description
PROSITE profilePS5129425.96962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665117IPR009057Homeodomain-like
SMARTSM007172.7E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001673.01E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRSPCCDEH GLKKGPWTPE EDQKLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SPEEEQTILN LHSILGNKWS AIAMHLPGRT DNEIKNLWHT HLKKKLIQMG  120
FDPMTHRPRT DFFTALPQLL ALLQLHQLMN SHPQDDDHAA RLQVLEAIQA AKLQYFQCLI  180
QSVSATSNNC YNCSDLETIS LLSSQMTSSF PSHNPPQNID SSNQLASFFE PPESNDTKQC  240
SNFSGFNQGE NNKPRTPFAS PLPPLTDVSV ANQGDGCSIT SCDGNGTPFC WPEIMLDDQF  300
MSEFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380857.10.0PREDICTED: myb-related protein 308
SwissprotQ9SBF36e-96MYB92_ARATH; Transcription factor MYB92
TrEMBLM0RL310.0M0RL31_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P24560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.14e-94myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]