PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P24080_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 26031.5 Da PI: 9.5282 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.3e-30 | 93 | 151 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+ +g++fpr+Y+rC++a +Cpvkkkv+rsaed+++++ tYeg Hnh+ GSMUA_Achr10P24080_001 93 MDGYQWRKYGQKVTRGNPFPRAYFRCSFApSCPVKKKVQRSAEDKSLLVATYEGVHNHK 151 6***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-29 | 90 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-25 | 91 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-34 | 92 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-25 | 94 | 151 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.429 | 94 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLNQISEENR RLTGMVSDMY KNHSALRRRL SYLASVSPCE KGSASPKRKR VDCEKHAASD 60 DEHGCKRSRE DAMTKTSKVY VRTDPSDPSL VVMDGYQWRK YGQKVTRGNP FPRAYFRCSF 120 APSCPVKKKV QRSAEDKSLL VATYEGVHNH KHPSPDEVYT VKCPSHINSS APSIDPVVTR 180 QPDVDRGFGE IESPKFDRAL VEQMVATLTK DPNFTAAVAA AISERFLRDP PA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 91 | 153 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380792.1 | 1e-173 | PREDICTED: WRKY transcription factor WRKY76 | ||||
Swissprot | Q6IEK5 | 2e-63 | WRK76_ORYSI; WRKY transcription factor WRKY76 | ||||
TrEMBL | M0RKY3 | 1e-172 | M0RKY3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P24080_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6660 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-61 | WRKY DNA-binding protein 40 |