PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P23700_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 319aa    MW: 34553 Da    PI: 5.8919
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P23700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.2e-0861107242
                zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                             +++ C+ +e+ ++   C+ +   lC+dC   +H+       H+++pl
  GSMUA_Achr10P23700_001  61 RAWLCEVCEHVPAVVTCKADAAALCADCDADIHSAnplarrHERIPL 107
                             5789*****************************66889999999886 PP

2CCT68.41.9e-23244287144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k++
  GSMUA_Achr10P23700_001 244 REARLMRYREKRKSRRFEKTIRYASRKAYAEARPRIKGRFAKRT 287
                             9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.5271764IPR000315B-box-type zinc finger
SMARTSM003362.0E-101764IPR000315B-box-type zinc finger
CDDcd000213.78E-62164No hitNo description
PROSITE profilePS5011910.42460107IPR000315B-box-type zinc finger
PfamPF006432.7E-661107IPR000315B-box-type zinc finger
SMARTSM003362.9E-965107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.797244286IPR010402CCT domain
PfamPF062032.4E-17244286IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKREEVEEKK GGAYLSVASK PCDSCRVSAA LLYCRADVAY LCRGCDARVH GANGLASRHE  60
RAWLCEVCEH VPAVVTCKAD AAALCADCDA DIHSANPLAR RHERIPLLPF LGPAPKPPAT  120
GRVGSGDDEE TDAEAASSLL PQEGPVLRSA AEFFFSDADA YLDLDYGSSM DEMKTVVGAD  180
QPFFLAPGGD YFDLNIAGCK QEADHSLCHS VFSTPSIHAA VVPDVSQPSA VGMPCDPAAA  240
RLDREARLMR YREKRKSRRF EKTIRYASRK AYAEARPRIK GRFAKRTEVE AEVGRIYSSA  300
ADAVAALMAD DDYGVVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1530490.0DQ153049.1 Musa AAB Group CONSTANT-like protein (CO1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380766.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK532e-79COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLM0RKU50.0M0RKU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P23700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-70CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]