PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr10P23700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 319aa MW: 34553 Da PI: 5.8919 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.8 | 2.2e-08 | 61 | 107 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +++ C+ +e+ ++ C+ + lC+dC +H+ H+++pl GSMUA_Achr10P23700_001 61 RAWLCEVCEHVPAVVTCKADAAALCADCDADIHSAnplarrHERIPL 107 5789*****************************66889999999886 PP | |||||||
2 | CCT | 68.4 | 1.9e-23 | 244 | 287 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k++ GSMUA_Achr10P23700_001 244 REARLMRYREKRKSRRFEKTIRYASRKAYAEARPRIKGRFAKRT 287 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.527 | 17 | 64 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-10 | 17 | 64 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.78E-6 | 21 | 64 | No hit | No description |
PROSITE profile | PS50119 | 10.424 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-6 | 61 | 107 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-9 | 65 | 107 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.797 | 244 | 286 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.4E-17 | 244 | 286 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MKREEVEEKK GGAYLSVASK PCDSCRVSAA LLYCRADVAY LCRGCDARVH GANGLASRHE 60 RAWLCEVCEH VPAVVTCKAD AAALCADCDA DIHSANPLAR RHERIPLLPF LGPAPKPPAT 120 GRVGSGDDEE TDAEAASSLL PQEGPVLRSA AEFFFSDADA YLDLDYGSSM DEMKTVVGAD 180 QPFFLAPGGD YFDLNIAGCK QEADHSLCHS VFSTPSIHAA VVPDVSQPSA VGMPCDPAAA 240 RLDREARLMR YREKRKSRRF EKTIRYASRK AYAEARPRIK GRFAKRTEVE AEVGRIYSSA 300 ADAVAALMAD DDYGVVPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ153049 | 0.0 | DQ153049.1 Musa AAB Group CONSTANT-like protein (CO1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380766.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9SK53 | 2e-79 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | M0RKU5 | 0.0 | M0RKU5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P23700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24790.1 | 3e-70 | CONSTANS-like 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|