PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P23280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 487aa    MW: 53926.5 Da    PI: 9.3512
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P23280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.44.8e-39223299278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             CqvegC++dls +k+yhr+h+vCe hsk+p+v+v+g++ rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+
  GSMUA_Achr10P23280_001 223 CQVEGCHVDLSAVKDYHRKHRVCEGHSKSPKVIVAGQTCRFCQQCSRFHDLSEFDQKKRSCRRRLFDHNARRRKPQP 299
                             **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-32215284IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.231220297IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-36222302IPR004333Transcription factor, SBP-box
PfamPF031103.0E-30223296IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MNEAPIYNPD DSYHLFLPSL TKPCAGPTRV RKWRKGQHLS ASVSCSMDLT SKIPFHRDWE  60
NFSLFSRKEG EISKPAQRCE WEVVDNHGSY GNGNGSVYSS VGGLGPGSDL GNGSSRSSIS  120
SSIGFPSKAG TGALRFIIDS VEKPPEILKV NKDLAMVETG ILHKVVAVEG PKEPRTQLKL  180
GKRTYFEGGI HSTNSSSLAS TNPSIGLVKK PKVSQQNMQS SHCQVEGCHV DLSAVKDYHR  240
KHRVCEGHSK SPKVIVAGQT CRFCQQCSRF HDLSEFDQKK RSCRRRLFDH NARRRKPQPE  300
TIKFGSSVFS ASYYDDRQQM NLMFGRDPFN HVTNMANSTW DDSGGFKLIP SQGRWINFGN  360
SGDINEQLHF PSNGISKNVS RVNHDWDGLL PFKGTNAEAT NKGPGAPVFA SNLDGALDLQ  420
RALSLLSTES WVPYQEPISD FQSVNANIIT SHSAIHPTNA TTVSWQKTEL LLPRPSLFNL  480
QNHVSQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-272232961184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278295KKRSCRRRLFDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018675307.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X2
SwissprotA2YGR54e-90SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLM0RKQ30.0M0RKQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P23280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-48squamosa promoter binding protein-like 2