PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P22610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 442aa MW: 49851.1 Da PI: 8.1308

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P22610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	88.8	8.8e-28	191	296	1	109
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l++lL+ cA+av+++d + a++lL+++++++sp+gd qRla++f+ +L+arla+++s++y+al +++t+ +++l+a++l+ + GSMUA_Achr10P22610_001 191 LRTLLILCAQAVAADDRRTANELLKQIRQHSSPHGDGSQRLAHCFADGLEARLAGTGSQIYHALVAKRTT---ATDVLKAYHLYLAA 274 5789***********************************************************99999...99******** PP GRAS 88 sPilkfshltaNqaIleavege 109 +P+ ++sh+ Nq+Il+ ++++ GSMUA_Achr10P22610_001 275 CPFKRISHFFSNQTILNLADKA 296 **************998876 PP
2	GRAS	48	2.1e-15	303	366	154	218
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218 +e++eetg+rLa++A++++vpfe+++ +a+++e++++e+L++ ++E+++Vn+ ++ +l de++ GSMUA_Achr10P22610_001 303 PTERIEETGRRLADYAKSFNVPFEYQA-IASKWETIRVEDLHIAKDEVVVVNCLYRFRNLIDETG 366 6789*********************.7***************************9999875 PP
3	GRAS	58.2	1.8e-18	359	438	295	374
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +n++ g er+er et+++W+ r +aGF +++ + +++k+ak ++ ++ + + ++e+ g+l++gWk+r ++++SaW+ GSMUA_Achr10P22610_001 359 RNLIDETGPERVERPETYKQWQVRNLRAGFVQLRPNPDIMKKAKDKVKGCYHKDFVIDEDGGWLIQGWKGRIVYAISAWK 438 6999*********************************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.487	165	442	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-25	191	296	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-16	359	438	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEEDIDEKIS TYKEESALRA AEKPFYDILG QKYPPSPDRP PPINIYQSSE SPYERSSNHD 60 SSDNQHSRAH AGSVDYSPQT PSSSSNSVSS SIEEPFNNVS ISPNLFFGSV PAWHFKRGVE 120 EARKFLPIND KLVINLESND DLDLAEGRSN KQSAVSSQEE VRSEMFDMVL LCSSGGKARG 180 KKQTKKEVVD LRTLLILCAQ AVAADDRRTA NELLKQIRQH SSPHGDGSQR LAHCFADGLE 240 ARLAGTGSQI YHALVAKRTT ATDVLKAYHL YLAACPFKRI SHFFSNQTIL NLADKASKPG 300 FRPTERIEET GRRLADYAKS FNVPFEYQAI ASKWETIRVE DLHIAKDEVV VVNCLYRFRN 360 LIDETGPERV ERPETYKQWQ VRNLRAGFVQ LRPNPDIMKK AKDKVKGCYH KDFVIDEDGG 420 WLIQGWKGRI VYAISAWKPK GA

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEEDIDEKIS TYKEESALRA AEKPFYDILG QKYPPSPDRP PPINIYQSSE SPYERSSNHD  60
SSDNQHSRAH AGSVDYSPQT PSSSSNSVSS SIEEPFNNVS ISPNLFFGSV PAWHFKRGVE  120
EARKFLPIND KLVINLESND DLDLAEGRSN KQSAVSSQEE VRSEMFDMVL LCSSGGKARG  180
KKQTKKEVVD LRTLLILCAQ AVAADDRRTA NELLKQIRQH SSPHGDGSQR LAHCFADGLE  240
ARLAGTGSQI YHALVAKRTT ATDVLKAYHL YLAACPFKRI SHFFSNQTIL NLADKASKPG  300
FRPTERIEET GRRLADYAKS FNVPFEYQAI ASKWETIRVE DLHIAKDEVV VVNCLYRFRN  360
LIDETGPERV ERPETYKQWQ VRNLRAGFVQ LRPNPDIMKK AKDKVKGCYH KDFVIDEDGG  420
WLIQGWKGRI VYAISAWKPK GA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-20	198	368	26	231	Protein SCARECROW
5b3h_A	2e-20	198	368	25	230	Protein SCARECROW
5b3h_D	2e-20	198	368	25	230	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380633.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_018675120.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	Q9XE58	7e-88	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M0RKI6	0.0	M0RKI6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P22610_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-83	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]