PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 710aa    MW: 80094.6 Da    PI: 7.4346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.6e-122572247
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                            grWT+eE +++ da +++ g+   +W+++a+ ++ g+t  ++ s+++ +
  GSMUA_Achr10P22470_001 25 GRWTQEENKRFEDALAKFDGDtpdRWEKVAALIP-GKTVPDVLSHYREL 72
                            8*********************************.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5242276IPR017884SANT domain
SMARTSM007173.7E-102375IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-52474IPR009057Homeodomain-like
PfamPF002491.3E-82572IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-122579IPR009057Homeodomain-like
CDDcd001674.61E-72673No hitNo description
PROSITE profilePS512935.724106160IPR017884SANT domain
SMARTSM007170.027108158IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-10111160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-10112158IPR006447Myb domain, plants
CDDcd001670.003112156No hitNo description
Gene3DG3DSA:1.10.10.602.1E-4118154IPR009057Homeodomain-like
PROSITE profilePS513755.678298333IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.002334364IPR002885Pentatricopeptide repeat
PfamPF015359.1E-4337366IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0014337366IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.8E-5339386IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.213365399IPR002885Pentatricopeptide repeat
PfamPF015351.4E-4368397IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.1E-5368401IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.83428463IPR002885Pentatricopeptide repeat
PfamPF130413.4E-9428475IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-4430464IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.8E-5431498IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.802464499IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0018466500IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.796500530IPR002885Pentatricopeptide repeat
PfamPF015350.0047503527IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.8E-5530582IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.886532566IPR002885Pentatricopeptide repeat
PfamPF144329.8E-30614700IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MKTTRSWMDV LPCSTNRFVR QENGGRWTQE ENKRFEDALA KFDGDTPDRW EKVAALIPGK  60
TVPDVLSHYR ELVDDVSEIE AGRSISSREE ERNPLDRRGA QASFFIFCMH LWTSIPNLLF  120
LLGLDKCGKG DWRNISRNFV MTRTPTQVAS HAQKYFIRLN SGSKDKRRTS IHDITTVDLP  180
DNKPPSPSSQ PSTVTTQSSL AMTPSLSGQL SAILDSDQLG EVASVFNPSS HGNKLMQRHF  240
GISQHRMKLQ PQMLPSLMDE LVSTAARFPK SEQEFVHLCS KGRLREALRG FLPELWSDPN  300
LFSHLLNGCC VPQQSLRQGQ QIHALIVAAG AASHRFTANH LLHMYSKLGQ GNAARALFDE  360
MPERNVASWN AMITGLAHFE LDEEGLEFFR MMREAGLRPD EFGLGSALRC CAGLKDIERV  420
LKGLPTINVV SCNTIIAGRA QNGDTEGAAI QLFDKMVREG TDPSEVTFLS LLYACSHSGL  480
KDKGKEYFEL MMHKYGFKPT LKHYTCMVDL LGRSGCLDEA ETLIRSMPIP ADAVIWKTLL  540
SACKTHKNAE MAERVAECVL RLDPQDSASY VLLSNIRATT ARWIDVSEVR RAMREKRVRK  600
EPGISWVEYK GQVYQELGYL PDTSTVFHDM EEEEKETSLA HHNEKLAIAF AILSLPVGVP  660
IRIMKNLRVC DDCHEAIKYI SKIAEREIVV RDVTRFHHFR DGECSCKGYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-3727863415335PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380612.10.0PREDICTED: pentatricopeptide repeat-containing protein At2g41080
RefseqXP_018674557.10.0PREDICTED: pentatricopeptide repeat-containing protein At2g41080
SwissprotQ8S9M41e-129PP198_ARATH; Pentatricopeptide repeat-containing protein At2g41080
TrEMBLM0RKH20.0M0RKH2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-54MYB family protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]