PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 300aa    MW: 32475.5 Da    PI: 8.2334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31128186259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp +++itY+ eHnh+
  GSMUA_Achr10P22020_001 128 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRADPAIFIITYTAEHNHP 186
                             79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-31113188IPR003657WRKY domain
PROSITE profilePS5081134.176122188IPR003657WRKY domain
SuperFamilySSF1182904.45E-26123188IPR003657WRKY domain
SMARTSM007742.1E-37127187IPR003657WRKY domain
PfamPF031061.6E-25129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MADDDWDLGA VVRSCRMAAA PRQPLSSSPL HTAPVEAEAE GGKGGSFLGF PDLFRGRDGV  60
WELEELCKPF FPKVRQQLPR AAVAVAGPHQ PPPSRQSHRP VSQIPRSKRK KNQQKKVVCH  120
VPAAGLSSDV WAWRKYGQKP IKGSPYPRGY YRCSSSKGCL ARKQVERSRA DPAIFIITYT  180
AEHNHPAPTH RNSLAGSTRH KLPSPEGDHP PPGNPSSSPP SSSTATGLSP TTPLTNSMED  240
ELLRRRPMEG KDEDVDVDEE EGMILADDME VMGEDDLLLV GGVEEGASPA ASGGGGVRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-21115189680Disease resistance protein RRS1
5w3x_D8e-21115189680Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381766.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM0RKC70.0M0RKC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-62WRKY family protein