PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P21880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 310aa    MW: 34762.9 Da    PI: 9.0671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P21880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.39.7e-26123182258
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                             +Dgy+WrKYGqKe+ g+++ r+YYrCt +   gC ++k+v+rs++dp v+++tY+geH++
  GSMUA_Achr10P21880_001 123 EDGYSWRKYGQKEILGTRHRRGYYRCTRSnsvGCLATKQVQRSDRDPCVFHVTYRGEHTC 182
                             7**************************988899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-26111182IPR003657WRKY domain
PROSITE profilePS5081121.964117180IPR003657WRKY domain
SuperFamilySSF1182904.97E-23121182IPR003657WRKY domain
SMARTSM007743.0E-35122184IPR003657WRKY domain
PfamPF031061.4E-24123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MCSAWDLSFL LRLLAHAEEQ TRQLEANLGD ASAADHCRSL VQQISSDLKE AVSVARLMDF  60
EGPQQPAWQG NAAVDLPRWS SEGLWSENSE TVLKEQERRE MKTLPKWTIQ VQVSGSQAGG  120
VPEDGYSWRK YGQKEILGTR HRRGYYRCTR SNSVGCLATK QVQRSDRDPC VFHVTYRGEH  180
TCLDNLQARL HDEAPTILEA RHHLQDQHFS SPFMSPPTSE SNYFAVSPCQ RSSYGGGTAD  240
AAFKPPPHVE APTLSLRGRP NTLTTGGRER RPAPRGDFCY KNHKLQVKQL RKHGARGGGP  300
RNRTVPYAVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-16123182968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381765.11e-168PREDICTED: probable WRKY transcription factor 41
TrEMBLM0RKB30.0M0RKB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P21880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-28WRKY family protein