PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr10P21750_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 33664.4 Da PI: 8.9038 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.8 | 2.1e-53 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPtdeel+ +yL+kk++ + ++l ++i +vd++k+ePwdL+ k ++++ ++ewyfF+++dkky+tg+r+nrat++g+Wk GSMUA_Achr10P21750_001 10 VPPGFRFHPTDEELLYYYLRKKLAYEAIDL-DIIGDVDLNKLEPWDLKdKcRIESgPQNEWYFFCRKDKKYPTGTRTNRATAAGFWK 95 69****************************.99**************843455552455**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk+++ +++ +g++ktLvfy+grap+g+ktdW+mheyrl GSMUA_Achr10P21750_001 96 ATGRDKAIHLGNSKRIGMRKTLVFYTGRAPHGRKTDWIMHEYRL 139 ******************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-57 | 6 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.218 | 10 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-28 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MITSNRQLMV PPGFRFHPTD EELLYYYLRK KLAYEAIDLD IIGDVDLNKL EPWDLKDKCR 60 IESGPQNEWY FFCRKDKKYP TGTRTNRATA AGFWKATGRD KAIHLGNSKR IGMRKTLVFY 120 TGRAPHGRKT DWIMHEYRLD RETSEVQLVN YELRGFWFCI VQEDAWVVCK VFQKKSHPTH 180 ILPETVVEED QFDSSARSPR TMERKQNFHP PSDFSFNVSM HLPQLLSSEP FVSPPVPPVS 240 MRSTLGGCVT LPQERLNWDW SILDKLLASH QNLDQILQSK SNPPTQFR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 7 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 7 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 7 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 7 | 176 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-46 | 7 | 176 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-46 | 7 | 176 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 7 | 176 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380512.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Refseq | XP_018675040.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Swissprot | Q9MA17 | 6e-91 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | M0RKA0 | 0.0 | M0RKA0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P21750_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-68 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|