PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P21100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Whirly
Protein Properties Length: 374aa    MW: 41494.5 Da    PI: 8.8356
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P21100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly202.45.8e-631993371139
                  Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsne 87 
                             s+yk+kaal+v++++p+f  l+sg+ k++++G++ll++a+a a+r+ydW++kq+f+ls+ ev++l++l++k+sceffhdp+++ s+e
  GSMUA_Achr10P21100_001 199 SIYKGKAALTVEPRAPEFAPLESGAYKVSKEGFILLQFAPAGATRQYDWSRKQVFSLSVVEVGHLMSLGAKDSCEFFHDPFKGRSDE 285
                             7************************************************************************************** PP

                  Whirly  88 GkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                             Gkvrk+lk ePlpdG+G+f+nlsv+n l++++es+++P++kaef++l+s+++
  GSMUA_Achr10P21100_001 286 GKVRKVLKAEPLPDGTGHFFNLSVQNRLLNVDESIYIPITKAEFSILNSAFN 337
                             ************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.2E-77188358IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.2E-73192374IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.3E-59200334IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSLQKFATIM FFSSYPAVFF SKSSICFGKI YKDDSCYADG YSCLWDQIHY PGVHLHIPCC  60
WRGIIICTFE VYSPEGVVSG TSRARLIDGR ISFTAITAAP ACAFSHFGVM SSRSCPLSLR  120
PSPLLPSSSA PLRISFSCPT TLTLGSKKKA QLSVLCRRSD YFDQQRLFSR PPSPSQDEPS  180
FLASQPPGAQ PSRVFVGYSI YKGKAALTVE PRAPEFAPLE SGAYKVSKEG FILLQFAPAG  240
ATRQYDWSRK QVFSLSVVEV GHLMSLGAKD SCEFFHDPFK GRSDEGKVRK VLKAEPLPDG  300
TGHFFNLSVQ NRLLNVDESI YIPITKAEFS ILNSAFNFVI PYLLGWHTFA NAIKPEDSFR  360
SNNARSGPEM EWGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-10518837232218p24: plant transcriptional regulator PBF-2
1l3a_B1e-10518837232218p24: plant transcriptional regulator PBF-2
1l3a_C1e-10518837232218p24: plant transcriptional regulator PBF-2
1l3a_D1e-10518837232218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380437.10.0PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-108WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLM0RK350.0M0RK35_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P21100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-107ssDNA-binding transcriptional regulator