PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P20500_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 11128.4 Da PI: 9.4513 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.9e-09 | 13 | 57 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT++ +l+ +a + + ++ +W +ar +g g+t ++k ++ GSMUA_Achr10P20500_001 13 SWTAQQNKLFERALAVYDKDtpdRWQNVARAVG-GKTVDEVKRHYE 57 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.94 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 5.5E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.39E-12 | 12 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 13 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-6 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.77E-6 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASGSLSRSS GSSWTAQQNK LFERALAVYD KDTPDRWQNV ARAVGGKTVD EVKRHYELLV 60 EDLKFIESNR VPYPYYKSSS SRAGGADEEQ RLRCLKLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-36 | 1 | 98 | 1 | 93 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380360.1 | 1e-67 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-37 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | M0RJX5 | 2e-66 | M0RJX5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P20500_001 | 4e-67 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 8e-37 | RAD-like 6 |