PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P19970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 206aa    MW: 23683.1 Da    PI: 10.4264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P19970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd++l+d+++ +G  +W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr10P19970_001 14 KGAWSKEEDQKLIDYIRAHGRVCWRSLPEAAGLLRCGKSCRLRWINYL 61
                            79******************88**********99************97 PP
2Myb_DNA-binding54.62.5e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rgr+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr10P19970_001  67 RGRFEEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.923961IPR017930Myb domain
SuperFamilySSF466894.4E-2612108IPR009057Homeodomain-like
SMARTSM007178.1E-131363IPR001005SANT/Myb domain
PfamPF002495.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211568IPR009057Homeodomain-like
CDDcd001674.11E-101661No hitNo description
PROSITE profilePS5129426.78262116IPR017930Myb domain
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001673.94E-1169112No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRSPCCVNRG NNNKGAWSKE EDQKLIDYIR AHGRVCWRSL PEAAGLLRCG KSCRLRWINY  60
LRPDVKRGRF EEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRKKLASMG  120
IDPDNHRVIH NGRLHRSHSS GNATRSSIDD ATNGLQNNSK NGFPSPKLKN LYTNTKQCVN  180
NMMSYSIMSH RLLYYLTLHK ISLVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380308.11e-118PREDICTED: myb-related protein 308-like
SwissprotP813931e-70MYB08_ANTMA; Myb-related protein 308
TrEMBLM0RJS21e-150M0RJS2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P19970_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-72myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]