PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P19900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 328aa MW: 36102.6 Da PI: 6.2915

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P19900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	7.2e-56	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL++kv++ ++ + ++i++vdi+k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tg GSMUA_Achr10P19900_001 5 LPPGFRFHPTDEELITYYLTRKVTEFSFAT-RAIADVDINKCEPWDLPGKASMGEKEWYFFSMKDRKYPTGLRTNRATDAGYWKTTG 90 79***********************999.88***********988999***************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke+++ g +vg+kktLvfykgrap+gekt+Wvmheyrl GSMUA_Achr10P19900_001 91 KDKEIFH-CGVVVGMKKTLVFYKGRAPRGEKTSWVMHEYRL 130 ***.9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-64	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	59.603	5	159	IPR003441	NAC domain
Pfam	PF02365	7.5E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEETLPPGFR FHPTDEELIT YYLTRKVTEF SFATRAIADV DINKCEPWDL PGKASMGEKE 60 WYFFSMKDRK YPTGLRTNRA TDAGYWKTTG KDKEIFHCGV VVGMKKTLVF YKGRAPRGEK 120 TSWVMHEYRL QTSCTAEGGV GSLSFFLQEE WVVCRVFRKS PTGKKPQPDS PAMPASLESQ 180 GELDVSVLNK LVGSSGFDRL QTDYSLCNSN SSGRLDMNWF LARAAAAGQA SLPWASGLLA 240 SGLAPSPAIP KGLSFNGQQQ PEGVVDVAGL TSFVAQGDAL FGNDLKSSFP TASSSIGVEC 300 AQQQQEPPPP PQQQQTQSFN QESIWSSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	4	165	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	4	165	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	4	165	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	4	165	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	4	165	19	174	NAC domain-containing protein 19
3swm_B	3e-55	4	165	19	174	NAC domain-containing protein 19
3swm_C	3e-55	4	165	19	174	NAC domain-containing protein 19
3swm_D	3e-55	4	165	19	174	NAC domain-containing protein 19
3swp_A	3e-55	4	165	19	174	NAC domain-containing protein 19
3swp_B	3e-55	4	165	19	174	NAC domain-containing protein 19
3swp_C	3e-55	4	165	19	174	NAC domain-containing protein 19
3swp_D	3e-55	4	165	19	174	NAC domain-containing protein 19
4dul_A	3e-55	4	165	16	171	NAC domain-containing protein 19
4dul_B	3e-55	4	165	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380301.1	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FLJ2	7e-76	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M0RJR5	0.0	M0RJR5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P19900_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-87	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]