PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P19840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 175aa    MW: 19939.8 Da    PI: 10.1981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P19840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181865148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd ll+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr10P19840_001 18 RGPWTLEEDTLLIHYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 65
                            89********************************************97 PP
2Myb_DNA-binding53.46.1e-1771114146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T+eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr10P19840_001  71 RGNLTPEEQLMILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 114
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9031365IPR017930Myb domain
SuperFamilySSF466891.27E-3115112IPR009057Homeodomain-like
SMARTSM007172.1E-141767IPR001005SANT/Myb domain
PfamPF002491.0E-151865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231972IPR009057Homeodomain-like
CDDcd001675.65E-112065No hitNo description
PROSITE profilePS5129425.74366120IPR017930Myb domain
SMARTSM007172.9E-1570118IPR001005SANT/Myb domain
PfamPF002498.2E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2473119IPR009057Homeodomain-like
CDDcd001671.22E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSETRGSSGK YGDMELRRGP WTLEEDTLLI HYIACHGEGR WNLLARCSGL KRTGKSCRLR  60
WLNYLKPDIK RGNLTPEEQL MILELHSKWG NRWSRIAQHL PGRTDNEIKN YWRTRVQKQA  120
RQLKVDANSA IIEAPAALPA PPSSLDSRLP CPSSHQQHPT SWMASHSIHS LVASP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121201108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380293.13e-92PREDICTED: myb-related protein P-like
SwissprotQ9C9G71e-69MYB62_ARATH; Transcription factor MYB62
TrEMBLM0RJQ91e-126M0RJQ9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P19840_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-71myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]