PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P19130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 297aa    MW: 33172.9 Da    PI: 7.5027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P19130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l++++++ G g+W++ ++  g++R++k+c++rw +yl
  GSMUA_Achr10P19130_001 14 KGPWTPEEDQKLIQYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding569.4e-1867112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr10P19130_001  67 RGKFSPEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.781961IPR017930Myb domain
SuperFamilySSF466893.15E-3211108IPR009057Homeodomain-like
SMARTSM007171.7E-151363IPR001005SANT/Myb domain
PfamPF002498.2E-181461IPR001005SANT/Myb domain
CDDcd001671.38E-121661No hitNo description
PROSITE profilePS5129427.47462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2865117IPR009057Homeodomain-like
SMARTSM007176.4E-1766114IPR001005SANT/Myb domain
PfamPF002499.0E-1767112IPR001005SANT/Myb domain
CDDcd001674.82E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRPPCCDES GIKKGPWTPE EDQKLIQYIQ KNGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIRIG  120
VDPMTHHPRM DLLATLTQLL CLADLTRIME LRAWDDHAAR FLQSLLQSPA TINMSSFSSI  180
IPEMKPMSSM NTQAPDTTTS VPSPGLFPAA ISNAEFYGVP EMSFGFHQQP LGNYIKQDST  240
CNDELEAAMS TPSALLRDAD RSLGNGDNCI ISSNAGCVLP PSFWSEFFDD PLVRGPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380206.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018674382.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z21e-90MYB93_ARATH; Transcription factor MYB93
TrEMBLM0RJI80.0M0RJI8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P19130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-85myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]