PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P19030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 279aa MW: 30794.5 Da PI: 8.4887

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P19030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.3	2.6e-20	125	173	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g GSMUA_Achr10P19030_001 125 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 173 8****9.******955...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.53E-32	123	183	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.1E-32	124	182	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-38	124	187	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.064	124	181	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.41E-23	124	182	IPR016177	DNA-binding domain
Pfam	PF00847	2.0E-14	125	173	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-11	125	136	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-11	147	163	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSAFLSTDPS REALEPCIHG APTSSFSSTA SSTFPQPLCF PSLSSSPPFS SLFHQNPIFF 60 LSSPLSSSAQ MVPQHVQAQF QYQQQLMAAS SDRRSLRSGN LLAPHSRSMK RAGAPPSLPK 120 PTKLFRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDRAAFK LRGDAARLNF 180 PELRRDGAHV GLPLHSSVDA KLQAICETLK ISRKQGSTSP SSSESSLSLE EDESSSGSSA 240 ASAIQYLDFS EAPWDESESF VLHKYPSWEI NWDSILSSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-20	123	181	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-20	123	181	4	63	ATERF1
3gcc_A	2e-20	123	181	4	63	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380194.2	1e-146	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Refseq	XP_018674559.1	1e-146	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Refseq	XP_018674560.1	1e-146	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Refseq	XP_018674561.1	1e-146	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Refseq	XP_018674562.1	1e-146	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	2e-62	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	M0RJH8	0.0	M0RJH8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P19030_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP382	35	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	1e-45	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]