PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P18880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 467aa    MW: 52035.8 Da    PI: 5.6937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P18880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.5e-152973348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             WT +Ed+ll + ++++G+++W++Ia+ +   +t  qc+ rw++yl
  GSMUA_Achr10P18880_001 29 TWTSQEDDLLREHIALHGTDNWTSIAALFK-DKTSRQCRRRWYTYL 73
                            6****************************9.*************97 PP
2Myb_DNA-binding42.71.3e-1379122146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +g W++eEd ll +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
  GSMUA_Achr10P18880_001  79 KGGWSAEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 122
                             688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.2552277IPR017930Myb domain
SuperFamilySSF466891.8E-2626120IPR009057Homeodomain-like
SMARTSM007171.2E-132675IPR001005SANT/Myb domain
CDDcd001678.60E-142973No hitNo description
PfamPF139213.7E-163090No hitNo description
Gene3DG3DSA:1.10.10.601.3E-193080IPR009057Homeodomain-like
PROSITE profilePS5129416.56978128IPR017930Myb domain
SMARTSM007172.0E-1478126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-1981128IPR009057Homeodomain-like
CDDcd001671.05E-1082123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MQGLEKENNP ISVAPSAKPP AKKDRHIVTW TSQEDDLLRE HIALHGTDNW TSIAALFKDK  60
TSRQCRRRWY TYLNSECKKG GWSAEEDMLL CEAQKIFGNR WTEIAKVVSG RTDNAVKNRF  120
STLCKKRVKL EASSKENKGS SFDQSNKRVI VQDGYAAAVA RESSTSNKQI RYHVLHPKEI  180
NEGHKRFLGE HGPEQNQLRP PLAVLVQNSD TSNGLTENLR GPLYDVSNKD NQGTFIRRDD  240
PKLTALLQQA ELLTSLSKKV NAENTNQSFD EAWKELQDYL IQTEDSGSLR RKLSGMGCML  300
DELRDLIEDL NSNKEEEQQP LRQLDSHEDS QGSSGCSTGS THDLNSAQGK SNPQYEDCSL  360
QTDNEVSYLN DDAACSSMTA SPEAILSVSE MPKDEVVSGC ALSEFASPLQ TIPPFQSFTD  420
GIPSPVFTSS ERHFLLNVLD LSSPATNTNS SKQPSCKRAL LDTFKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-273012810108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130LCKKRVKLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380173.10.0PREDICTED: transcription factor MYB80-like
TrEMBLM0RJG30.0M0RJG3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P18880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.21e-109myb domain protein 88