PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P18860_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 286aa MW: 32417.3 Da PI: 6.1109 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 86 | 138 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LA+ lgL rqV +WFqNrRa++k GSMUA_Achr10P18860_001 86 KKRLNIEQVRTLERNFELGNKLEPERKMQLARALGLRPRQVAIWFQNRRARWK 138 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.9e-41 | 84 | 174 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ekk+rl+ eqv++LE++Fe +kLeperK++lar+Lgl+prqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+ene+L++++++L GSMUA_Achr10P18860_001 84 EKKKRLNIEQVRTLERNFELGNKLEPERKMQLARALGLRPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKTENEALQSQNKKL 170 69************************************************************************************* PP HD-ZIP_I/II 88 reel 91 r+e+ GSMUA_Achr10P18860_001 171 RAEI 174 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 61 | 141 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.19E-19 | 76 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 83 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.13E-15 | 85 | 141 | No hit | No description |
Pfam | PF00046 | 6.1E-15 | 86 | 138 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.1E-5 | 111 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 120 | 136 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-13 | 140 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MACNGMASSS SFPSNFMFHT ETPYEEGNQL TAPLGSLLHT GPQDLRGGVA PVMGKRSISF 60 PGIESCEEMN ADDDLSDDGW QAGEKKKRLN IEQVRTLERN FELGNKLEPE RKMQLARALG 120 LRPRQVAIWF QNRRARWKTK QLEKDYDVLK RQFEAIKTEN EALQSQNKKL RAEILAFRGT 180 ETSDMINLNK ETEGSCSNRS ENSSEINIDI SRTSVIESSL PPHQILPYFP SIRPADINQL 240 LHNSCKPEFQ CAKVENEAPE VSFSNLLGSM GDQSALWSWP DHHHFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380171.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX21-like isoform X1 | ||||
Swissprot | Q8S7W9 | 9e-90 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | M0RJG1 | 0.0 | M0RJG1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P18860_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 7e-74 | HD-ZIP family protein |