PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P18670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 287aa    MW: 32161.3 Da    PI: 6.9303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P18670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-19111160255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y G+r+++ +g+W+AeIrdp+   k  r++lg+f taeeAa+a++a + +l+g
  GSMUA_Achr10P18670_001 111 RYIGIRQRP-WGKWAAEIRDPN---KGIRVWLGTFNTAEEAARAYDAEAHRLRG 160
                             699******.**********93...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-12111160IPR001471AP2/ERF domain
CDDcd000182.70E-30111168No hitNo description
Gene3DG3DSA:3.30.730.101.7E-30111169IPR001471AP2/ERF domain
PROSITE profilePS5103223.156111168IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21111169IPR016177DNA-binding domain
SMARTSM003801.1E-34111174IPR001471AP2/ERF domain
PRINTSPR003672.2E-10112123IPR001471AP2/ERF domain
PRINTSPR003672.2E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MCGGAIISDF IPLATAASQR VMAEHLWPGL EKGKQTTRRR RRGVEVPDDD DDDDDFEADF  60
QEFSDETQVD EFDAVHFGFG SEAPFPRDGS PKSVYLDGPA IKSSKRKRKN RYIGIRQRPW  120
GKWAAEIRDP NKGIRVWLGT FNTAEEAARA YDAEAHRLRG KNAKVNFPTG AASLSSRKRS  180
SKPTASVIPK PKVLEKLDCN QNSNYLFELS EELYANEPYM KFLPTPYFEG SSDASMDSLF  240
GGADLWKQIN NTMLMKDFGG LETLASCHEV LVICRAKVPS RTLLVIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19112168360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19112168663ATERF1
3gcc_A2e-19112168663ATERF1
5wx9_A4e-191101681372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380143.11e-136PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLM0RJE20.0M0RJE2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P18670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-29related to AP2 12