PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P17610_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 30553.5 Da PI: 7.7081 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv ++ +G+ W + +++ g++R++k+c++rw++yl GSMUA_Achr10P17610_001 14 RGAWTANEDKILVSYISTHGTTKWGSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ GSMUA_Achr10P17610_001 67 RGNISDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.278 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.525 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRKPCCSKE GLNRGAWTAN EDKILVSYIS THGTTKWGSL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLVKRLQGGS 120 SQLPSNPSPA TAQSKGKDTA VATPPPVTGS KVIQTKALRC TTAFFGQDTA CMPPRLAPEE 180 SDGCSKISPF GSSLDVVAAF PSSSDAWKER DDGVQVENPE SKEADDAANM GFYPDDLMSL 240 DGALIGNWME KDQFQQDNML DVKLLASILE ADEQGYWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381716.1 | 0.0 | PREDICTED: transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 1e-61 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | M0RJ36 | 0.0 | M0RJ36_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P17610_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-64 | MYB family protein |