PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P17210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 1207aa MW: 134647 Da PI: 8.9719

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P17210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	45	81	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ W++++ t++ +R+ +++ GSMUA_Achr10P17210_001 45 QWSKEELERFYEAYRKYGKD-WRKVSGTIP-NRSSEMVE 81 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-11	40	91	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-5	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-6	45	84	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-8	45	85	IPR001005	SANT/Myb domain
CDD	cd00167	4.09E-6	46	88	No hit	No description
PROSITE profile	PS50090	6.481	46	85	IPR017877	Myb-like domain
SMART	SM01135	8.2E-55	661	762	IPR033471	DIRP domain
Pfam	PF06584	4.4E-33	661	761	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1207 aa Download sequence Send to blast
MASTRKSRNV NKRFKVFEDW SEKDETPPKK SRTRKRKLSD MLGPQWSKEE LERFYEAYRK 60 YGKDWRKVSG TIPNRSSEMV EALYNMNKAY LSLPEGTATA AGLIAMMTDH HNILQEGNES 120 DPESNDVAKA SQKPQKRGRG KFRLISKGSD GCSLDRSQYQ SASSRYGCLS LLKKKRSGDL 180 FLGNQPRAVG KRTPRIPVSN ANMYSKDDKE KSAFLIKQPS KSEVNAVDDE GAHVAALALA 240 EVLQRGGSPQ VSRTPENRVD HIRSSPVKSS EQKSVELEID RSKLSSQMDG DCHENSLGSR 300 EAENGVFARD GNEGSGAVEA PKRVKKRQGK RPRTSNAESF QIDDDREACS GTEEGSSVRK 360 IKDETDLEVK VSKTTRGSIG SRKRSRQLFF GDENSALDAL QTLADLSVNI LLPLSVVESE 420 SSAQVKEEQA NVDTDEKPNI PESLPLNYQR DKPKVPGKKE RRHSTSVGSD ILSRKSSKVV 480 KGLQHDAKVI AEMNQQACAC IGMTEKRKGK SLSRKIPKSE FCTDSQKSES HKMEVFAEEG 540 KRSTAKVKHV SEVSLLLRQG KFIKQPENSS STTDPERALT DLSETTLCDG IENQVNLLTK 600 HRSRRKICLQ KALAWKDFKS DVVGDDRPGH SNAVIRMIEK GKLSHCLSSK LLRRWCMFEW 660 FYSAIDSPWF AKSEFVEYLN HVRLGHIPRL TRVEWGVIRS SLGKPRRLSK QFLKEEREKL 720 EQYRESVRAH YAELRAGLKE GLPRDLALPL SVGQRVIACH PKTRELHNGS ILTVDRSRCR 780 VQFDQPELGV EFVMDIDSAP LYPFDNIPEA FRPQDSVLNR YCNSFKDMKL EDGLKDWRTG 840 SSTRLAPNES FNIADGSYQM HTLMKQAKVD SIDAIAQAKA TVIQVAAAAQ QAMCNQPCTL 900 SQIQEKEADI KALAELSRAL DKKEALLIEL RNMNGEVSEK QKDGDPIKDM EHFRKQYAMV 960 LVQLRDANDQ VALALLSLRQ RNTYHNNSTH PWNRPMENSG VPVGPSELFN PSAVLNQDLG 1020 SHVVEITCRQ KARTMVDAAV QAMCTLKEGE DAFTKIGQAL DLANNRSSGS GSCMLGVHGA 1080 PNPGYNNTAN QDHTASTSDM PTVHAPKPNS STDADLQLPS ELISSCVSTL LMIQSCTERQ 1140 YPPAEIAQIL DSAITSLQPH SPHNLPIYRE IETCMVIIKN QMLALIPTPS AIAPEITTST 1200 PWAGYIL

Sequence ? help Back to Top

Protein Sequence Length: 1207 aa Download sequence Send to blast

MASTRKSRNV NKRFKVFEDW SEKDETPPKK SRTRKRKLSD MLGPQWSKEE LERFYEAYRK  60
YGKDWRKVSG TIPNRSSEMV EALYNMNKAY LSLPEGTATA AGLIAMMTDH HNILQEGNES  120
DPESNDVAKA SQKPQKRGRG KFRLISKGSD GCSLDRSQYQ SASSRYGCLS LLKKKRSGDL  180
FLGNQPRAVG KRTPRIPVSN ANMYSKDDKE KSAFLIKQPS KSEVNAVDDE GAHVAALALA  240
EVLQRGGSPQ VSRTPENRVD HIRSSPVKSS EQKSVELEID RSKLSSQMDG DCHENSLGSR  300
EAENGVFARD GNEGSGAVEA PKRVKKRQGK RPRTSNAESF QIDDDREACS GTEEGSSVRK  360
IKDETDLEVK VSKTTRGSIG SRKRSRQLFF GDENSALDAL QTLADLSVNI LLPLSVVESE  420
SSAQVKEEQA NVDTDEKPNI PESLPLNYQR DKPKVPGKKE RRHSTSVGSD ILSRKSSKVV  480
KGLQHDAKVI AEMNQQACAC IGMTEKRKGK SLSRKIPKSE FCTDSQKSES HKMEVFAEEG  540
KRSTAKVKHV SEVSLLLRQG KFIKQPENSS STTDPERALT DLSETTLCDG IENQVNLLTK  600
HRSRRKICLQ KALAWKDFKS DVVGDDRPGH SNAVIRMIEK GKLSHCLSSK LLRRWCMFEW  660
FYSAIDSPWF AKSEFVEYLN HVRLGHIPRL TRVEWGVIRS SLGKPRRLSK QFLKEEREKL  720
EQYRESVRAH YAELRAGLKE GLPRDLALPL SVGQRVIACH PKTRELHNGS ILTVDRSRCR  780
VQFDQPELGV EFVMDIDSAP LYPFDNIPEA FRPQDSVLNR YCNSFKDMKL EDGLKDWRTG  840
SSTRLAPNES FNIADGSYQM HTLMKQAKVD SIDAIAQAKA TVIQVAAAAQ QAMCNQPCTL  900
SQIQEKEADI KALAELSRAL DKKEALLIEL RNMNGEVSEK QKDGDPIKDM EHFRKQYAMV  960
LVQLRDANDQ VALALLSLRQ RNTYHNNSTH PWNRPMENSG VPVGPSELFN PSAVLNQDLG  1020
SHVVEITCRQ KARTMVDAAV QAMCTLKEGE DAFTKIGQAL DLANNRSSGS GSCMLGVHGA  1080
PNPGYNNTAN QDHTASTSDM PTVHAPKPNS STDADLQLPS ELISSCVSTL LMIQSCTERQ  1140
YPPAEIAQIL DSAITSLQPH SPHNLPIYRE IETCMVIIKN QMLALIPTPS AIAPEITTST  1200
PWAGYIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380005.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBL	M0RIZ6	0.0	M0RIZ6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P17210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding