PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P16170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 674aa    MW: 75001.8 Da    PI: 5.7735
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P16170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.92.9e-21124224198
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++ +++a+e+       + ++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ +v++++L +gD +
  GSMUA_Achr10P16170_001 124 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQDPPWQ--ELVAKDLHENEWRFRHIFRGQPRRHLLTTGWSVYVSSKRLVAGDAF 208
                             99****************************986555555..8********************************************* PP

                             EEEE-SSSEE..EEEEE- CS
                      B3  81 vFkldgrsefelvvkvfr 98 
                             +F   + +++el+v+v+r
  GSMUA_Achr10P16170_001 209 IFL--RGENGELRVGVRR 224
                             ***..449999*****97 PP
2Auxin_resp103.72.3e-34250332183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha++t++ F+v+Y+Pras+seF ++++k+++a + k+svGmRfkm+fe+++ +err+sGt+v+v d  +++W +S+WrsLk
  GSMUA_Achr10P16170_001 250 ASHAITTGTLFSVFYKPRASRSEFLISLNKYLEAKSYKLSVGMRFKMRFEGDETPERRFSGTIVAVIDKVSSQWADSEWRSLK 332
                             789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-42114253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-39120239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-19122224No hitNo description
PROSITE profilePS5086310.179124226IPR003340B3 DNA binding domain
PfamPF023624.5E-19124224IPR003340B3 DNA binding domain
SMARTSM010191.6E-20124226IPR003340B3 DNA binding domain
PfamPF065073.9E-32250332IPR010525Auxin response factor
PfamPF023093.3E-5551591IPR033389AUX/IAA domain
PROSITE profilePS5174525.883555648IPR000270PB1 domain
SuperFamilySSF542775.4E-12558632No hitNo description
PfamPF023091.7E-8602646IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MALPHLNISS VIGTSGDALY DELWHACAGP LVTLPRKGER AYYFPQGHME QLEASTNQGL  60
DQHVPVFNLP SKILCKVVNV ELKAEPDTDE VYAQITLLPE PNEGEITSPD PPLPEPERCK  120
IHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMTQDPP WQELVAKDLH ENEWRFRHIF  180
RGQPRRHLLT TGWSVYVSSK RLVAGDAFIF LRGENGELRV GVRRLMRQLN NMPSSVISSH  240
SMHLGVLATA SHAITTGTLF SVFYKPRASR SEFLISLNKY LEAKSYKLSV GMRFKMRFEG  300
DETPERRFSG TIVAVIDKVS SQWADSEWRS LKVQWDESSS IQRPDSVSPW ELEPLVAATP  360
PTSQPVQRIK RTRPPASSVM LPEPSPAPGT WKFQVENSQM FSFSGSQRGE KLYSPSKPTS  420
LFSSASQPSS IGFNANIAPS TAASSHMCWP IRTETQSDTF SASINREPCD KKQETGKGCR  480
LFGIQLFESS EIEETSRVPT ISGVGLDKPA TSLEADSDQQ SQPSNIDQSD AAAVNSEPEN  540
LCLKLAQETQ GRQLRSCTKV HMQGMAVGRA VDLTRLIGYD QLVQKLEEMF DIEGELSGGV  600
KKWVVVYTDD EDDMMLVGDD PWHEFCSMVR KIYIYTSEEA KRLCPKKKLP VISEAAKSGS  660
EKAFLDADAD IVAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01335513355Auxin response factor 1
4ldw_A0.01335513355Auxin response factor 1
4ldw_B0.01335513355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379878.10.0PREDICTED: auxin response factor 7
RefseqXP_009379879.10.0PREDICTED: auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLM0RIP20.0M0RIP2_MUSAM; Auxin response factor
STRINGGSMUA_Achr10P16170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]