PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P15430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 520aa    MW: 56387.5 Da    PI: 6.3958
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P15430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.68.7e-10191253159
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnk 59 
                             +Wt+  +  L++a++e+ e+l+r++ ++ +We+v+  +     ++++ +s++qC++k +nl+k
  GSMUA_Achr10P15430_001 191 EWTDTAIGSLLDAYTEKYEQLNRRNPRGRDWEDVATIVsercNKQKVCKSAEQCNNKNDNLKK 253
                             5********************************987776655999999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-11189253No hitNo description
Gene3DG3DSA:3.40.1160.102.2E-17234312IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.27E-33251308IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006965.1E-12252493IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.27E-33363508IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.102.2E-17367415IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.101.2E-21416508IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVGSGQSYCE SRLGLSQHQG GSSLSAAHHY VTAKAAPIPL HHRAHHQLGA AESIASSGKK  60
GVVVNGGGGE DHEGNGEAFG QTDASKCPVA PAFDDHCFAV DDNTFADQHP AAADDDDINT  120
DNADRKGVAT SASHHQHLHH HRQPHHQSPK RKDRDDASNG EPPYCYNSSL AANKKSRPMS  180
SPGDNGKGRE EWTDTAIGSL LDAYTEKYEQ LNRRNPRGRD WEDVATIVSE RCNKQKVCKS  240
AEQCNNKNDN LKKVILKICG TALAGVGPYD VDPKVIALIA KEIAIANHSG LEVAVVIGGQ  300
NIFCGDTRIA ATGIDRATTY QMGYAFPVSM LILIFTIVKW LECCAIACWE LRVVVRLGIN  360
ILEKSTDFYL HMNYGSMLAS LMNAIMLQAS LEKLGVEVRM QSTLMMQEIA EPYISPLFST  420
DAAASLRASE IHADVVLKGT TVDSIYNCHS RNSNGSAFEH ISFRELVSRG FTAMDMTALN  480
ICEENSIPVV IFNLSEPGNV SKALYGDQTV ILIDPSGRII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-3625251310239Uridylate kinase
3ek5_B1e-3625251310239Uridylate kinase
3ek5_C1e-3625251310239Uridylate kinase
3ek5_D1e-3625251310239Uridylate kinase
3ek5_E1e-3625251310239Uridylate kinase
3ek5_F1e-3625251310239Uridylate kinase
3ek6_A1e-3625251310239Uridylate kinase
3ek6_B1e-3625251310239Uridylate kinase
3ek6_C1e-3625251310239Uridylate kinase
3ek6_D1e-3625251310239Uridylate kinase
3ek6_E1e-3625251310239Uridylate kinase
3ek6_F1e-3625251310239Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404384.11e-173PREDICTED: uncharacterized protein LOC103987725 isoform X1
TrEMBLM0RIG90.0M0RIG9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P15430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-73Trihelix family protein