PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr10P15390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 311aa MW: 35811.1 Da PI: 6.957 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75 | 1.2e-23 | 2 | 92 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++Li+++ + + ++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk++++ +k+ +++++++ +++d GSMUA_Achr10P15390_001 2 KWTDGMVRLLIQVVYHKSAAASAPVsallQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDLLGKGtACRVVENQALLDT 90 7************9999888886322355**********************************************559******99999 PP trihelix 85 le 86 ++ GSMUA_Achr10P15390_001 91 MD 92 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-21 | 2 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MKWTDGMVRL LIQVVYHKSA AASAPVSALL QKKGKWKSVS RAMMEKGFYV SPQQCEDKFN 60 DLNKRYKRVN DLLGKGTACR VVENQALLDT MDLSPKAKDE ARKLLNSKHL FFREMCAYHN 120 AGQLCFHHPP GLVDTVLFTT KAADDDDYDD DGDEDNDDME GQNHKRHGDH HHQHKHEEAE 180 EDEDSKGFQQ QRQWLKRKAA ELEEQRVAYQ CRAFQLERQH FKWLRFSTSK EREMERMKLD 240 NERLCLENDR MLLLLRQKEL ELTHGGSGGG GSSAAIPSAE QQLMLQNTNT NQRRPAEQPH 300 IPNADHASTT A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB839201 | 4e-33 | AB839201.1 Acacia mangium mRNA for SHOOT2 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018682513.1 | 1e-120 | PREDICTED: uncharacterized protein LOC103987728 | ||||
Refseq | XP_018682514.1 | 1e-120 | PREDICTED: uncharacterized protein LOC103987728 | ||||
Refseq | XP_018682515.1 | 1e-120 | PREDICTED: uncharacterized protein LOC103987728 | ||||
Refseq | XP_018682516.1 | 1e-120 | PREDICTED: uncharacterized protein LOC103987728 | ||||
Refseq | XP_018682517.1 | 1e-120 | PREDICTED: uncharacterized protein LOC103987728 | ||||
TrEMBL | M0RIG5 | 0.0 | M0RIG5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P15390_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11944 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10040.1 | 1e-51 | sequence-specific DNA binding transcription factors |