PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P15390_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 311aa    MW: 35811.1 Da    PI: 6.957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P15390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix751.2e-23292186
                trihelix  1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84
                            +Wt+ +v++Li+++  +  + ++      +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk++++  +k+ +++++++ +++d 
  GSMUA_Achr10P15390_001  2 KWTDGMVRLLIQVVYHKSAAASAPVsallQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDLLGKGtACRVVENQALLDT 90
                            7************9999888886322355**********************************************559******99999 PP

                trihelix 85 le 86
                            ++
  GSMUA_Achr10P15390_001 91 MD 92
                            97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-212117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKWTDGMVRL LIQVVYHKSA AASAPVSALL QKKGKWKSVS RAMMEKGFYV SPQQCEDKFN  60
DLNKRYKRVN DLLGKGTACR VVENQALLDT MDLSPKAKDE ARKLLNSKHL FFREMCAYHN  120
AGQLCFHHPP GLVDTVLFTT KAADDDDYDD DGDEDNDDME GQNHKRHGDH HHQHKHEEAE  180
EDEDSKGFQQ QRQWLKRKAA ELEEQRVAYQ CRAFQLERQH FKWLRFSTSK EREMERMKLD  240
NERLCLENDR MLLLLRQKEL ELTHGGSGGG GSSAAIPSAE QQLMLQNTNT NQRRPAEQPH  300
IPNADHASTT A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8392014e-33AB839201.1 Acacia mangium mRNA for SHOOT2 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682513.11e-120PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682514.11e-120PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682515.11e-120PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682516.11e-120PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682517.11e-120PREDICTED: uncharacterized protein LOC103987728
TrEMBLM0RIG50.0M0RIG5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P15390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-51sequence-specific DNA binding transcription factors