PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P15290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 496aa MW: 53386.9 Da PI: 6.584 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.4e-31 | 271 | 329 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ GSMUA_Achr10P15290_001 271 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCADDRSILITTYEGTHNHP 329 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-34 | 255 | 331 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-28 | 263 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 265 | 331 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 270 | 330 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-27 | 272 | 329 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MDSSGHPTVS TGIEFPICLN PRRDVRTMLL AKDEVSNDDR VAVGEVDFFS GEKKNSRSLV 60 ETELDLKVPS LSSIKKEDLT IQTRLHLQTP NTASDRSTVD DGSSKNEDDK EGMNELAAMQ 120 AEVARMKEEN QKLRAVLGQV TTSYNSLHMH LTTLMQQRNQ RETATPQAHE AMVEEKTDAK 180 DRDHGGVLVP RQFMDLGPAA DDEQTSDSST ASPDRSASPP GNAEVGSAEQ SWNPYKAQKL 240 NPTKPADHAQ EATMRKARVS VRARSEAPMI TDGCQWRKYG QKMAKGNPCP RAYYRCTMAA 300 GCPVRKQVQR CADDRSILIT TYEGTHNHPL PPAAMAMAST TSAAASMLLS GSMSSTDGLM 360 NSNFLARTIL PCSSNMATIS ASAPFPTVTL DLTQNPTNPL QYQRPPAGPF HVPYPGAAPA 420 FSAPSQPPSL PQAQPVMPPS MAETVNAATA AITADPNFTA ALTAAIKSII GGNHQTVNGS 480 NLIINNNNII PDKSCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 257 | 333 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF775521 | 0.0 | JF775521.1 Musa acuminata AAA Group WRKY6 transcription factor (WRKY6) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421491.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-125 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | M0RIF5 | 0.0 | M0RIF5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P15290_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-112 | WRKY family protein |